View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15023_low_25 (Length: 238)
Name: NF15023_low_25
Description: NF15023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15023_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 43076201 - 43076387
Alignment:
| Q |
21 |
ttacaaacttacagtacatattacaannnnnnnctacacatctctatctcctccatcaatttttcacatatagctccaagtgaatttttattctataaca |
120 |
Q |
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| T |
43076201 |
ttacaaacttacagtacatattacaatttttttctacacatctctatctcctccatcaatttttcacatatagctccaagtgaatttttattctataaca |
43076300 |
T |
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| Q |
121 |
ataaattatatgtaataataacaacaacaaaatgtacaattcaaataccgtggtagaaaataagaagaatacgtgtaaaatgaaacatta |
210 |
Q |
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| T |
43076301 |
ataaattatatgtaataataacaacaacaaaatgtacaattcaaataccgtggtagaaaat---aagaatacgtgtaaaatgaaacatta |
43076387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 43086428 - 43086614
Alignment:
| Q |
21 |
ttacaaacttacagtacatattacaannnnnnnctacacatctctatctcctccatcaatttttcacatatagctccaagtgaatttttattctataaca |
120 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43086428 |
ttacaaacttacagtacatattacaatttttttctacacatctctatctcctccatcaatttttcacatatagctccaagtgaatttttattctataaca |
43086527 |
T |
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| Q |
121 |
ataaattatatgtaataataacaacaacaaaatgtacaattcaaataccgtggtagaaaataagaagaatacgtgtaaaatgaaacatta |
210 |
Q |
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| T |
43086528 |
ataaattatatgtaataataacaacaacaaaatgtacaattcaaataccgtggtagaaaat---aagaatacgtgtaaaatgaaacatta |
43086614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 43090099 - 43090285
Alignment:
| Q |
21 |
ttacaaacttacagtacatattacaannnnnnnctacacatctctatctcctccatcaatttttcacatatagctccaagtgaatttttattctataaca |
120 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43090099 |
ttacaaacttacagtacatattacaatttttttctacacatctctatctcctccatcaatttttcacatatagctccaagtgaatttttattctataaca |
43090198 |
T |
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| Q |
121 |
ataaattatatgtaataataacaacaacaaaatgtacaattcaaataccgtggtagaaaataagaagaatacgtgtaaaatgaaacatta |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43090199 |
ataaattatatgtaataataacaacaacaaaatgtacaattcaaataccgtggtagaaaat---aagaatacgtgtaaaatgaaacatta |
43090285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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