View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15023_low_8 (Length: 450)
Name: NF15023_low_8
Description: NF15023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15023_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 7e-90; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 198 - 436
Target Start/End: Complemental strand, 8577679 - 8577442
Alignment:
| Q |
198 |
cattccacctactatacaaaatttgga-ttttcctca----attaacaatggagcttatcctagataagttgtagtataaataagtgagaagcacacatt |
292 |
Q |
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| T |
8577679 |
cattccacctactatacaaaatttggaattttcctcatttaattaacaatggagcttaacctagatgagttgtagtataaataagtgagaagcacacatt |
8577580 |
T |
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| Q |
293 |
tgagaacaataagagctttggagagatcattccagctaccatctttttcttcaatccatataatatgattcctttcataacctcaccattaacattaaca |
392 |
Q |
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| T |
8577579 |
tgagaacaataagagttttggagagatcattccagctaccatcattttcttcaatccatataatatgattcctttcataacctcaccattaacatta--- |
8577483 |
T |
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| Q |
393 |
ttaacatgttcatctcctttaatcctctcaacatcctttttgtt |
436 |
Q |
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| T |
8577482 |
---acatgtgcatctccttcaatcctctcaacatactttttgtt |
8577442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 8597225 - 8597337
Alignment:
| Q |
14 |
agatattgaagccaactattggagtattccctttattttttatattgagtaaatatttt-ttagtagaccaaaaaacattagtttttcgtcttattcaat |
112 |
Q |
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| T |
8597225 |
agatattgaagccaacggttggaatattccctttgttttttatattgagtaaatatttttttagtagaccaaaatacattagtttttcgtcttattccat |
8597324 |
T |
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| Q |
113 |
gtactctaacaaa |
125 |
Q |
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| T |
8597325 |
gtactctaacaaa |
8597337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 8577895 - 8577782
Alignment:
| Q |
11 |
cagagatattgaagccaactattggagtattccctttattttttatattgagtaaatattttttagtagaccaaaaaa-cattagttttt-cgtcttatt |
108 |
Q |
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| T |
8577895 |
cagagatatttaaaccaactgttggaatattc-----attttttaaattgactcaatattctttagtaaaccaaaaaaacattagttttttcgtgttatt |
8577801 |
T |
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| Q |
109 |
caatgtactctaacaaaca |
127 |
Q |
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| T |
8577800 |
ccatgtactctaacaaaca |
8577782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 306
Target Start/End: Original strand, 8597414 - 8597451
Alignment:
| Q |
269 |
ataaataagtgagaagcacacatttgagaacaataaga |
306 |
Q |
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| T |
8597414 |
ataaataagtgagaagcacacatttgagaacattaaga |
8597451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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