View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15024_high_11 (Length: 510)
Name: NF15024_high_11
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_high_11 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] chr6 (4 HSPs) |
| |
|
| [»] scaffold0649 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Original strand, 20596753 - 20597264
Alignment:
| Q |
1 |
agggtgcaaggatagnnnnnnnaactgtaggagtgttattgggcttgatggttgtttcctgaagggttactatggtgggaagttgctcgctgctattgga |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
20596753 |
agggtgcaaggatagtttttttaactgtaggagtgttattgggcttgatggttgtttcctgaagggttactatggtgggatgttgctcgctgctattgga |
20596852 |
T |
|
| Q |
101 |
agggatcctaatgatcagatgcttccaatagcttatgctgtggtggaaggagagaccaaggaatcttagaagtggttcttggagcttctaattgctgatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||| |
|
|
| T |
20596853 |
agggatcctaatgatcagatgcttccaatagcttatgctgtggtggaaggagagaccaaggaatcttggaattggttcttggagctactaattgctgatt |
20596952 |
T |
|
| Q |
201 |
taggtggaccaagactgtgtaagacttacacttttattagtgaccaacaaaaggtagttttacttcattattgtctttttaaatgttagac--nnnnnnn |
298 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20596953 |
taggtggaccaagactatgtaagacttacacttttattagtgaccaacaaaaggtagttttacttcattattgtctttttacttgttagacttttttttc |
20597052 |
T |
|
| Q |
299 |
ctgtttatttaacaatcacaattacattgcagggtcttttgccggctatggatgagttactacctgatgttgatcaaaggttttgtgtcaggcatctgta |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20597053 |
ctgtttatttaacaatcacaattacattgcagggtcttttgccgactatggatgagttactacctgatgttgatcaaaggttttgtgtcaggcatctgta |
20597152 |
T |
|
| Q |
399 |
caataactttagnnnnnnncatcctgggaaaaagttaaaggagttgatgtggagggcagcaaaagcaacctatgaaaatgcattcaattatgccatgaaa |
498 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||| |
|
|
| T |
20597153 |
caataactttaggaaaaaacatcctgggaaaaagttaaaggagttgatgtggagggcagcaaaagcaacttatgaaaatgcattcattgatgccatgaaa |
20597252 |
T |
|
| Q |
499 |
gagatcaaggat |
510 |
Q |
| |
|
|||||||||||| |
|
|
| T |
20597253 |
gagatcaaggat |
20597264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 26 - 256
Target Start/End: Complemental strand, 3814708 - 3814478
Alignment:
| Q |
26 |
tgtaggagtgttattgggcttgatggttgtttcctgaagggttactatggtgggaagttgctcgctgctattggaagggatcctaatgatcagatgcttc |
125 |
Q |
| |
|
||||||||| |||||||| | ||||| || ||| |||||||||||||||||||| ||||||| ||||| ||||||||||| || ||||| |||||||||| |
|
|
| T |
3814708 |
tgtaggagtattattgggttagatgggtgcttcttgaagggttactatggtgggcagttgctagctgcaattggaagggacccaaatgaccagatgcttc |
3814609 |
T |
|
| Q |
126 |
caatagcttatgctgtggtggaaggagagaccaaggaatcttagaagtggttcttggagcttctaattgctgatttaggtggaccaagactgtgtaagac |
225 |
Q |
| |
|
||||||| | || |||||| ||||| || || |||||||| | ||||||||| ||||| || | |||| ||| ||||||||||| ||| | || ||||| |
|
|
| T |
3814608 |
caatagcatttgttgtggttgaaggtgaaacaaaggaatcatggaagtggtttttggaactcttgattggtgacttaggtggacccagattatgcaagac |
3814509 |
T |
|
| Q |
226 |
ttacacttttattagtgaccaacaaaaggta |
256 |
Q |
| |
|
|||||| || |||||||| |||||||||||| |
|
|
| T |
3814508 |
ttacaccttcattagtgatcaacaaaaggta |
3814478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 509
Target Start/End: Complemental strand, 3814305 - 3814216
Alignment:
| Q |
420 |
tcctgggaaaaagttaaaggagttgatgtggagggcagcaaaagcaacctatgaaaatgcattcaattatgccatgaaagagatcaagga |
509 |
Q |
| |
|
|||||| || ||||| ||||| || |||||||||||||||||| |||| ||||| ||||||||| | ||| ||||||||||||||||| |
|
|
| T |
3814305 |
tcctggaaagaagttgaaggaattaatgtggagggcagcaaaatcaacttatgagaatgcattccttgatgtaatgaaagagatcaagga |
3814216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 382; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 23 - 510
Target Start/End: Original strand, 8697776 - 8698263
Alignment:
| Q |
23 |
aactgtaggagtgttattgggcttgatggttgtttcctgaagggttactatggtgggaagttgctcgctgctattggaagggatcctaatgatcagatgc |
122 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8697776 |
aactgtaggagtgttatcgggcttgatggttgtttcctgaagggttactatggtgggatgttgcttgctgctattggaagggatcctaatgatcagatgc |
8697875 |
T |
|
| Q |
123 |
ttccaatagcttatgctgtggtggaaggagagaccaaggaatcttagaagtggttcttggagcttctaattgctgatttaggtggaccaagactgtgtaa |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
8697876 |
ttccaatagcttatgctgtggtggaaggagagaccaaagaatcttggaagtggttcttggagcttctaattggtgatttaggtggaccaagattgtgtaa |
8697975 |
T |
|
| Q |
223 |
gacttacacttttattagtgaccaacaaaaggtagttttacttcattattgtctttttaaatgttagacnnnnnnnctgtttatttaacaatcacaatta |
322 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||| |
|
|
| T |
8697976 |
gacttacacttttattagtgaccagcaaaaggtagttttacttcattattgtctttttacatgttagactttttttctgtttaattaacaatcacaatta |
8698075 |
T |
|
| Q |
323 |
cattgcagggtcttttgccggctatggatgagttactacctgatgttgatcaaaggttttgtgtcaggcatctgtacaataactttagnnnnnnncatcc |
422 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
8698076 |
cattgcagggtcttttgccagctatggatgagttactgcctgatgttgatcaaaggttttgtgtaaggcatctgtacaataactttaggaaaaaacatcc |
8698175 |
T |
|
| Q |
423 |
tgggaaaaagttaaaggagttgatgtggagggcagcaaaagcaacctatgaaaatgcattcaattatgccatgaaagagatcaaggat |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
8698176 |
tgggaaaaagttaaaggagttgatgtggagggcagcaaaagcaacatatgaaaatgcattcaatgatgccatgaaagatatcaaggat |
8698263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 90 - 256
Target Start/End: Original strand, 11385722 - 11385888
Alignment:
| Q |
90 |
ctgctattggaagggatcctaatgatcagatgcttccaatagcttatgctgtggtggaaggagagaccaaggaatcttagaagtggttcttggagcttct |
189 |
Q |
| |
|
|||| ||||||| |||||||||||| || || |||||||| || |||||||| ||||||||||||| ||| ||||| | || |||||| ||||| |||| |
|
|
| T |
11385722 |
ctgcaattggaatggatcctaatgaccaaatacttccaattgcatatgctgttgtggaaggagagaacaaagaatcatggatgtggtttctggagattct |
11385821 |
T |
|
| Q |
190 |
aattgctgatttaggtggaccaagactgtgtaagacttacacttttattagtgaccaacaaaaggta |
256 |
Q |
| |
|
||||||||||| ||||| ||||||| || || ||||||||| | ||||||||||| ||||||||| |
|
|
| T |
11385822 |
cattgctgatttgggtggcacaagactttgcaatacttacactataattagtgaccagcaaaaggta |
11385888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 186
Target Start/End: Original strand, 26449191 - 26449339
Alignment:
| Q |
38 |
attgggcttgatggttgtttcctgaagggttactatggtgggaagttgctcgctgctattggaagggatcctaatgatcagatgcttccaatagcttatg |
137 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||| | |||||| ||||| ||||| | |||||| ||||| || || |||||||| || | | |
|
|
| T |
26449191 |
attgggcttgatggttgtttccttaagggaccttatggtggaatgttgctggctgccattggtatggatccaaatgaccaaatacttccaattgcatggg |
26449290 |
T |
|
| Q |
138 |
ctgtggtggaaggagagaccaaggaatcttagaagtggttcttggagct |
186 |
Q |
| |
|
||| || ||||||||||| || || || | ||| |||||||| ||||| |
|
|
| T |
26449291 |
ttgttgttgaaggagagactaaagagtcctggaaatggttcttagagct |
26449339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 20484698 - 20484601
Alignment:
| Q |
47 |
gatggttgtttcctgaagggttactatggtgggaagttgctcgctgctattggaagggatcctaatgatcagatgcttccaatagcttatgctgtggt |
144 |
Q |
| |
|
|||||||||||| |||| ||||| ||||| || |||||||| |||| ||||| ||||| || ||||| |||||| | || || ||||||| |||||| |
|
|
| T |
20484698 |
gatggttgtttcttgaaaggttattatgggggacagttgctcactgcaattgggagggacccaaatgaccagatgttgcctattgcttatgttgtggt |
20484601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 60 - 256
Target Start/End: Complemental strand, 23706147 - 23705951
Alignment:
| Q |
60 |
tgaagggttactatggtgggaagttgctcgctgctattggaagggatcctaatgatcagatgcttccaatagcttatgctgtggtggaaggagagaccaa |
159 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| ||||||||||| |||||||| |||||| |||| ||||| | || |||||| ||||| || || || |
|
|
| T |
23706147 |
tgaagggttactatggtggacagttgcttgctgcaattggaagggaccctaatgaccagatgattcctatagcatttgttgtggttgaaggtgaaacaaa |
23706048 |
T |
|
| Q |
160 |
ggaatcttagaagtggttcttggagcttctaattgctgatttaggtggaccaagactgtgtaagacttacacttttattagtgaccaacaaaaggta |
256 |
Q |
| |
|
|||||| | ||||||||| ||||| || || |||| ||| ||||||||| | ||| | || ||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
23706047 |
ggaatcatggaagtggtttttggaactcctgattggtgacttaggtggaactagattatgcaagacttacacatttattagtgatcaacaaaaggta |
23705951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 186
Target Start/End: Complemental strand, 24747434 - 24747286
Alignment:
| Q |
38 |
attgggcttgatggttgtttcctgaagggttactatggtgggaagttgctcgctgctattggaagggatcctaatgatcagatgcttccaatagcttatg |
137 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||| | |||||| ||||| ||||| | |||||| ||||| || || |||||||| || | | |
|
|
| T |
24747434 |
attgggcttgatggttgtttccttaagggaccttatggtggaatgttgctggctgccattggtatggatccaaatgaccaaatacttccaattgcatggg |
24747335 |
T |
|
| Q |
138 |
ctgtggtggaaggagagaccaaggaatcttagaagtggttcttggagct |
186 |
Q |
| |
|
|||| || ||||||||||| || || || | ||| |||||||| ||||| |
|
|
| T |
24747334 |
ctgttgttgaaggagagactaaagagtcctggaaatggttcttagagct |
24747286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 407
Target Start/End: Complemental strand, 23705864 - 23705794
Alignment:
| Q |
337 |
ttgccggctatggatgagttactacctgatgttgatcaaaggttttgtgtcaggcatctgtacaataactt |
407 |
Q |
| |
|
||||| ||||||||||| ||||||| ||||| || ||||| ||||||||||| || || ||||||||||| |
|
|
| T |
23705864 |
ttgcctgctatggatgaactactaccggatgtagaacaaagattttgtgtcagacacctttacaataactt |
23705794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 26 - 256
Target Start/End: Original strand, 23331148 - 23331378
Alignment:
| Q |
26 |
tgtaggagtgttattgggcttgatggttgtttcctgaagggttactatggtgggaagttgctcgctgctattggaagggatcctaatgatcagatgcttc |
125 |
Q |
| |
|
||||||||| | ||||| |||||||||||||| | |||||||| |||||||| || | | ||||| ||||||||||| || |||||||| ||||||| |
|
|
| T |
23331148 |
tgtaggagtataattggacttgatggttgttttttaaagggttattatggtggacagctcttggctgcaattggaagggaccccaatgatcaaatgcttc |
23331247 |
T |
|
| Q |
126 |
caatagcttatgctgtggtggaaggagagaccaaggaatcttagaagtggttcttggagcttctaattgctgatttaggtggaccaagactgtgtaagac |
225 |
Q |
| |
|
||||||| | ||||||||| ||||| || || || ||||| | ||| ||||| |||||||| || ||||||||||||||||| | ||| |||| ||| |
|
|
| T |
23331248 |
caatagcatttgctgtggttgaaggggaaacaaaagaatcatggaaatggtttttggagctacttattgctgatttaggtggtcatagattgtgcttgac |
23331347 |
T |
|
| Q |
226 |
ttacacttttattagtgaccaacaaaaggta |
256 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| |
|
|
| T |
23331348 |
ttacacttttataagtgatcaacaaaaggta |
23331378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 90 - 256
Target Start/End: Complemental strand, 21793612 - 21793446
Alignment:
| Q |
90 |
ctgctattggaagggatcctaatgatcagatgcttccaatagcttatgctgtggtggaaggagagaccaaggaatcttagaagtggttcttggagcttct |
189 |
Q |
| |
|
|||| ||||||| |||||||||||| || || |||||||| || |||||||| ||||||||||||| ||| ||||| | || |||||| |||||||||| |
|
|
| T |
21793612 |
ctgcaattggaatggatcctaatgaccaaatacttccaattgcatatgctgttgtggaaggagagaacaaagaatcatggatgtggtttctggagcttct |
21793513 |
T |
|
| Q |
190 |
aattgctgatttaggtggaccaagactgtgtaagacttacacttttattagtgaccaacaaaaggta |
256 |
Q |
| |
|
||||||||||| ||||| ||||||| || || ||||||||| | ||||||||||| ||||||||| |
|
|
| T |
21793512 |
cattgctgatttgggtggcacaagactttgcaatacttacactataattagtgaccagcaaaaggta |
21793446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 38 - 261
Target Start/End: Original strand, 24505843 - 24506066
Alignment:
| Q |
38 |
attgggcttgatggttgtttcctgaagggttactatggtgggaagttgctcgctgctattggaagggatcctaatgatcagatgcttccaatagcttatg |
137 |
Q |
| |
|
||||| || ||||| || ||| |||| || || ||||||||| | ||||| ||||| ||||| |||||||| |||||||| ||||||||||| || | || |
|
|
| T |
24505843 |
attggactggatggatgcttcttgaaaggatattatggtgggcaattgctagctgcaattgggagggatccaaatgatcaaatgcttccaattgcatttg |
24505942 |
T |
|
| Q |
138 |
ctgtggtggaaggagagaccaaggaatcttagaagtggttcttggagcttctaattgctgatttaggtggaccaagactgtgtaagacttacacttttat |
237 |
Q |
| |
|
| |||| ||||| || || ||||| || | ||||||||| ||||||||||| |||||||| ||||||||| || |||| ||||| ||||| ||||| |
|
|
| T |
24505943 |
ttttggtagaaggtgaaacaaaggagtcgtggaagtggtttttggagcttctgattgctgacttaggtggaagcaggttgtgcaagacatacacctttat |
24506042 |
T |
|
| Q |
238 |
tagtgaccaacaaaaggtagtttt |
261 |
Q |
| |
|
|||||| |||||||||||| |||| |
|
|
| T |
24506043 |
tagtgatcaacaaaaggtaatttt |
24506066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 38 - 189
Target Start/End: Complemental strand, 21009263 - 21009112
Alignment:
| Q |
38 |
attgggcttgatggttgtttcctgaagggttactatggtgggaagttgctcgctgctattggaagggatcctaatgatcagatgcttccaatagcttatg |
137 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||| | |||| | || || ||||||| |||||| ||||| || || |||||||| || | || |
|
|
| T |
21009263 |
attgggcttgatggttgtttccttaaggggccttatggtggaatgttgttggcggcaattggaatggatccaaatgaccaaatacttccaattgcatttg |
21009164 |
T |
|
| Q |
138 |
ctgtggtggaaggagagaccaaggaatcttagaagtggttcttggagcttct |
189 |
Q |
| |
|
| || || |||||||||||||| || || | ||| ||||||||||||||||| |
|
|
| T |
21009163 |
cagttgttgaaggagagaccaaagagtcctggaaatggttcttggagcttct |
21009112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 491
Target Start/End: Original strand, 23331451 - 23331621
Alignment:
| Q |
321 |
tacattgcagggtcttttgccggctatggatgagttactacctgatgttgatcaaaggttttgtgtcaggcatctgtacaataactttagnnnnnnncat |
420 |
Q |
| |
|
||||||| |||| ||||| || ||||||||||| |||| |||| ||||| ||||| || ||||| |||||||| ||||| |||||||| || |
|
|
| T |
23331451 |
tacattgtagggacttttaccagctatggatgaactacttcctggagttgaccaaagattctgtgtgaggcatctttacaacaactttaggaagaaatat |
23331550 |
T |
|
| Q |
421 |
cctgggaaaaagttaaaggagttgatgtggagggcagcaaaagcaacctatgaaaatgcattcaattatgc |
491 |
Q |
| |
|
||||| || ||||| ||||| |||||||||| ||||||||| || | ||||| |||||||||||| |||| |
|
|
| T |
23331551 |
cctggaaagaagttgaaggaattgatgtggaaggcagcaaaggccagttatgataatgcattcaatgatgc |
23331621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 26 - 256
Target Start/End: Original strand, 20622765 - 20622995
Alignment:
| Q |
26 |
tgtaggagtgttattgggcttgatggttgtttcctgaagggttactatggtgggaagttgctcgctgctattggaagggatcctaatgatcagatgcttc |
125 |
Q |
| |
|
||||||||| | ||||| |||||||||||||| | ||||||||||||||||| || | | ||||| ||||||||||| || |||||||| ||||||| |
|
|
| T |
20622765 |
tgtaggagtataattggacttgatggttgttttttaaagggttactatggtggacagctcttggctgcaattggaagggaccccaatgatcaaatgcttc |
20622864 |
T |
|
| Q |
126 |
caatagcttatgctgtggtggaaggagagaccaaggaatcttagaagtggttcttggagcttctaattgctgatttaggtggaccaagactgtgtaagac |
225 |
Q |
| |
|
||||||| | ||||||||| ||||| || || || ||||| | || ||||| ||||| || || ||||||||| ||||||| || ||| |||| ||| |
|
|
| T |
20622865 |
caatagcatttgctgtggttgaaggggaaacaaaagaatcatgaaaatggtttttggaactactcattgctgatctaggtggtcctagattgtgcttgac |
20622964 |
T |
|
| Q |
226 |
ttacacttttattagtgaccaacaaaaggta |
256 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| |
|
|
| T |
20622965 |
ttacacttttataagtgatcaacaaaaggta |
20622995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 90 - 256
Target Start/End: Complemental strand, 37102473 - 37102307
Alignment:
| Q |
90 |
ctgctattggaagggatcctaatgatcagatgcttccaatagcttatgctgtggtggaaggagagaccaaggaatcttagaagtggttcttggagcttct |
189 |
Q |
| |
|
|||||||| ||||||| || ||| |||| |||||||||||| | || |||| ||||| ||||| || |||||| ||| ||||| ||||||| || |
|
|
| T |
37102473 |
ctgctatttgaagggacccaaattatcaaatgcttccaatatcaattgtattggttgaaggggagacaaaaaaatcttggaaatggtttttggagcagct |
37102374 |
T |
|
| Q |
190 |
aattgctgatttaggtggaccaagactgtgtaagacttacacttttattagtgaccaacaaaaggta |
256 |
Q |
| |
|
|||||||| ||||||||||| || |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37102373 |
cattgctgacttaggtggacctggattgtgcttgacttacacttttattagtgaccaacaaaaggta |
37102307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 321 - 491
Target Start/End: Original strand, 20623068 - 20623238
Alignment:
| Q |
321 |
tacattgcagggtcttttgccggctatggatgagttactacctgatgttgatcaaaggttttgtgtcaggcatctgtacaataactttagnnnnnnncat |
420 |
Q |
| |
|
||||||| |||| ||||| || ||||||||||| |||| |||| ||||| ||||| || ||||| |||||||| ||||| |||||||| || |
|
|
| T |
20623068 |
tacattgtagggacttttaccagctatggatgaactacttcctggagttgaccaaagattatgtgtgaggcatctttacaacaactttaggaagaaatat |
20623167 |
T |
|
| Q |
421 |
cctgggaaaaagttaaaggagttgatgtggagggcagcaaaagcaacctatgaaaatgcattcaattatgc |
491 |
Q |
| |
|
||||| || ||||| ||||| |||||||||| |||||||||||| | ||||| |||||||||||| |||| |
|
|
| T |
20623168 |
cctggaaagaagttgaaggaattgatgtggaaggcagcaaaagccagttatgataatgcattcaatgatgc |
20623238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 407
Target Start/End: Complemental strand, 37102220 - 37102156
Alignment:
| Q |
343 |
gctatggatgagttactacctgatgttgatcaaaggttttgtgtcaggcatctgtacaataactt |
407 |
Q |
| |
|
||||||||||||||||| |||| || ||||||| |||||||| |||||||| ||||| ||||| |
|
|
| T |
37102220 |
gctatggatgagttacttcctggagtggatcaaatattttgtgtgaggcatctttacaacaactt |
37102156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 89 - 256
Target Start/End: Complemental strand, 15811696 - 15811529
Alignment:
| Q |
89 |
gctgctattggaagggatcctaatgatcagatgcttccaatagcttatgctgtggtggaaggagagaccaaggaatcttagaagtggttcttggagcttc |
188 |
Q |
| |
|
||||| ||||||| |||||||||||| || || |||||||| || |||||| | |||||||||||||| || ||||| | | | ||||| |||||||||| |
|
|
| T |
15811696 |
gctgcaattggaatggatcctaatgaccaaatacttccaattgcatatgctcttgtggaaggagagactaaagaatcatgggaatggtttttggagcttc |
15811597 |
T |
|
| Q |
189 |
taattgctgatttaggtggaccaagactgtgtaagacttacacttttattagtgaccaacaaaaggta |
256 |
Q |
| |
|
| || |||||||| ||||| | |||||| | || ||||| ||| | || ||||| || ||||||||| |
|
|
| T |
15811596 |
tcatagctgattttggtggcaccagactgcgcaaaacttatactataataagtgatcagcaaaaggta |
15811529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 256
Target Start/End: Original strand, 27654771 - 27654936
Alignment:
| Q |
90 |
ctgctattggaagggatcctaatgatcagatgcttccaatagcttatgctgtggtggaaggagagaccaaggaatcttagaagtggttcttggagcttct |
189 |
Q |
| |
|
|||| ||||||| |||||||||||| || || |||||||| ||||||||| | ||||||||||||| || ||||| | | ||||| ||||||||||| |
|
|
| T |
27654771 |
ctgcaattggaatggatcctaatgacca-atacttccaattgcttatgctatcgtggaaggagagaataaagaatcatgaacatggtttttggagcttct |
27654869 |
T |
|
| Q |
190 |
aattgctgatttaggtggaccaagactgtgtaagacttacacttttattagtgaccaacaaaaggta |
256 |
Q |
| |
|
|| ||| || | ||||| | ||||| || || ||||||||| | |||||||| || ||||||||| |
|
|
| T |
27654870 |
catagctaatcttggtggcactagactttgcaaaacttacactataattagtgatcagcaaaaggta |
27654936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 159
Target Start/End: Original strand, 3126900 - 3127012
Alignment:
| Q |
47 |
gatggttgtttcctgaagggttactatggtgggaagttgctcgctgctattggaagggatcctaatgatcagatgcttccaatagcttatgctgtggtgg |
146 |
Q |
| |
|
||||| |||||||| || ||||| ||||| || | || ||| |||| ||||| || || |||||||| |||||| | ||||||||||||||||| || | |
|
|
| T |
3126900 |
gatgggtgtttcctaaaaggttattatggaggacaattactcactgccattgggagagaccctaatgaccagatgttgccaatagcttatgctgttgttg |
3126999 |
T |
|
| Q |
147 |
aaggagagaccaa |
159 |
Q |
| |
|
| || |||||||| |
|
|
| T |
3127000 |
agggtgagaccaa |
3127012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 42732994 - 42732954
Alignment:
| Q |
216 |
tgtgtaagacttacacttttattagtgaccaacaaaaggta |
256 |
Q |
| |
|
|||||||||| ||||||||||| ||||| |||||||||||| |
|
|
| T |
42732994 |
tgtgtaagacatacacttttataagtgatcaacaaaaggta |
42732954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 138
Target Start/End: Complemental strand, 19012015 - 19011915
Alignment:
| Q |
38 |
attgggcttgatggttgtttcctgaagggttactatggtgggaagttgctcgctgctattggaagggatcctaatgatcagatgcttccaatagcttatg |
137 |
Q |
| |
|
||||| |||||||| ||||| || || || || |||||||| || |||| ||||||||||||||||||||||||||||| ||||| ||||| || |||| |
|
|
| T |
19012015 |
attggccttgatggatgttttctcaaagggtattatggtggtcagctgctggctgctattggaagggatcctaatgatcaaatgctaccaattgcatatg |
19011916 |
T |
|
| Q |
138 |
c |
138 |
Q |
| |
|
| |
|
|
| T |
19011915 |
c |
19011915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 256
Target Start/End: Complemental strand, 29508 - 29288
Alignment:
| Q |
36 |
ttattgggcttgatggttgtttcctgaagggttactatggtgggaagttgctcgctgctattggaagggatcctaatgatcagatgcttccaatagctta |
135 |
Q |
| |
|
||||||| || ||||| ||||| ||||| |||||||||| || | ||||| ||||| || || || || || ||||| ||||||||||||||||| | |
|
|
| T |
29508 |
ttattggactggatggatgttttttgaagagttactatgggggtcaattgctagctgcaatagggagagacccaaatgaccagatgcttccaatagcatt |
29409 |
T |
|
| Q |
136 |
tgctgtggtggaaggagagaccaaggaatcttagaagtggttcttggagcttctaattgctgatttaggtggaccaagactgtgtaagacttacactttt |
235 |
Q |
| |
|
|| |||||| ||||| || || || ||||| | ||| ||||| ||||| || || || ||| |||||||| |||| | || ||||||||||| ||| |
|
|
| T |
29408 |
tgttgtggttgaaggtgaaacaaaagaatcatggaattggtttttggaactccttatcaatgacctaggtggaacaaggttatgcaagacttacaccttt |
29309 |
T |
|
| Q |
236 |
attagtgaccaacaaaaggta |
256 |
Q |
| |
|
|| ||||| ||| ||||||| |
|
|
| T |
29308 |
atcagtgatcaatgaaaggta |
29288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 207
Target Start/End: Complemental strand, 1379 - 1261
Alignment:
| Q |
89 |
gctgctattggaagggatcctaatgatcagatgcttccaatagcttatgctgtggtggaaggagagaccaaggaatc-ttagaagtggttcttggagctt |
187 |
Q |
| |
|
||||| ||||||| |||||||||||| || || |||||||| || |||| ||| || ||||||||||| || ||||| | |||| ||||| ||||||||| |
|
|
| T |
1379 |
gctgcaattggaatggatcctaatgaccaaatacttccaattgcatatgatgttgttgaaggagagactaaagaatcatgagaa-tggtttttggagctt |
1281 |
T |
|
| Q |
188 |
ctaattgctgatttaggtgg |
207 |
Q |
| |
|
|| ||||||||||| ||||| |
|
|
| T |
1280 |
ctcattgctgatttgggtgg |
1261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 24329922 - 24329797
Alignment:
| Q |
38 |
attgggcttgatggttgtttcctgaagggttactatggtgggaagttgctcgctgctattggaagggatcctaatgatcagatgcttccaatagcttatg |
137 |
Q |
| |
|
|||||||| ||||| |||||| |||| ||||||||||| ||| | | || |||||||||| | ||||| |||||||| ||||| || || || |||| |
|
|
| T |
24329922 |
attgggctagatgggtgtttcttgaaaggttactatggcgggcaacttctaactgctattggtacagatccaaatgatcaaatgctacccattgcatatg |
24329823 |
T |
|
| Q |
138 |
ctgtggtggaaggagagaccaaggaa |
163 |
Q |
| |
|
|||| || ||||| ||||| |||||| |
|
|
| T |
24329822 |
ctgttgttgaaggggagacaaaggaa |
24329797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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