View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15024_high_16 (Length: 439)
Name: NF15024_high_16
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_high_16 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 17 - 439
Target Start/End: Original strand, 49858079 - 49858502
Alignment:
| Q |
17 |
aagacaaaggtagatggtagatctat-aagataaaagaaatatttcataacaataatttgcatagcaacataggatcttgggatagaaaattctattttg |
115 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
49858079 |
aagacaaaggtagatggtagatctattaagataaaagaaatatttcataacaataatttgcatggcaacataggagcttgggatagaaaattctattttg |
49858178 |
T |
|
| Q |
116 |
tgatggaaatccaactcaatctaaaaattcaattttttagttaattaacttagtaaaggagattggttattaactctagtctcctgtgggatcaatatct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49858179 |
tgatggaaatccaactcaatctaaaaattcaattttttagctaattaacttagtaaaggagattggttattaactctagtctcctgtgggatcaatatct |
49858278 |
T |
|
| Q |
216 |
tttactacacaataaaactgtgcaattataggcttatcagcaaccaatgagaattcatcaatgagttttcctatggtaagaattgctcccttatgcttaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49858279 |
tttactacacaataaaactgtgcaattataggcttatcagcaaccaatgagaattgatcaatgagttttcctatggtaagaattgctcccttatgcttaa |
49858378 |
T |
|
| Q |
316 |
gaatgactatgttcatcaggaaccggaaggaagtatgcgtagtttggatgtttgaatgggagagctctaggaggctatggttctccaaaagcgtgtgaaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49858379 |
gaatgactatgttcatcaggaaccggaaggaagtatgcgtagtttggatgtttgaacgggagagctctaggaggctatggttctccaaaagcgtgtgaaa |
49858478 |
T |
|
| Q |
416 |
atggtttatgaataacattcaaat |
439 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
49858479 |
atggtttatgaataatattcaaat |
49858502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University