View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15024_high_2 (Length: 670)
Name: NF15024_high_2
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 555; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 12 - 652
Target Start/End: Original strand, 37413498 - 37414142
Alignment:
| Q |
12 |
agagaagaaaggaacaaaaagaatctatacatgtgtgtgttggaaatttattcttcaaccgtgaaggtggtgtgcgtcaatctacctctctaatatttgc |
111 |
Q |
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| T |
37413498 |
agagaagaaaggaacaaaaagaatctatacatgtgtgtgttggaaatttattcttcaaccgtgaaggtggtgtgcgtcaatctacctctccaat--ttgc |
37413595 |
T |
|
| Q |
112 |
agcttggtgaaatcacggtaaaatcaatataattgggatacaagatttgaatatgcactaggtttgacgatataattctgttaaaaaatataggtttttg |
211 |
Q |
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| T |
37413596 |
agcttggtgaaatcacggtaaaatcaatataattgggatacaagatttgaatatgcactaggtttgacgatataattctgttaaaaaatataggtttttg |
37413695 |
T |
|
| Q |
212 |
tcaaaattaatgtgtgaccatgataaaacaacatttagatagagagcatcatcgtaaaaagatgtattttattgttgtagcacaaaattactgtctaaac |
311 |
Q |
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| T |
37413696 |
tcaaaattaatgtgtgaccatgataaaacaacatttagatagagagcatcatcgtaaaaagatgtattttattgttgtagcacaaaattactgtctaaac |
37413795 |
T |
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| Q |
312 |
ttccaaatgcactctttcatag-aataaaaacttcaaaatgcatgcactcacacttttattgttccaattaagagtgaatacacaaaaacagacatgctg |
410 |
Q |
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| T |
37413796 |
ttccaaatgcactctttcatagaaaaaaaaacttcaaaatgcatgcactcacacttttattgttccaattaggagtgaatacacaaaaacagacatgctg |
37413895 |
T |
|
| Q |
411 |
tgtatatgaaccatgcatatagcatttctcttgacacctcattggctagtggaagagtgtcttgaaatccagtaattctttatttcttcagctgttcttc |
510 |
Q |
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| T |
37413896 |
tgtatatgaaccatgcatatagcatttctcttgacacttcattggctagtggaagagtgtcttgaaatccagtaattctttatttcttcagctgttcttc |
37413995 |
T |
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| Q |
511 |
caggtattcttcccgcaattaaaggccacctgaaaatgaatatact------aaatggttagttttattnnnnnnnnnntgatagataagccaagtgtta |
604 |
Q |
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| T |
37413996 |
caggtattcttcccgcaattaaaggccacctgaaaatgaatatactatattcaaatggttagttttatt-aaaaaaaaatgatagataagccaagtgtta |
37414094 |
T |
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| Q |
605 |
attaattatataaaggaaatataatttaatcatacttcattacctatc |
652 |
Q |
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| T |
37414095 |
attaattatataaaggaaatataatttaatcatacttcattacctatc |
37414142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 465 - 529
Target Start/End: Complemental strand, 16558960 - 16558896
Alignment:
| Q |
465 |
gagtgtcttgaaatccagtaattctttatttcttcagctgttcttccaggtattcttcccgcaat |
529 |
Q |
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| T |
16558960 |
gagtgtcttgaattccaatatttttctatttcttctgctgttcttccaggaattcttccagcaat |
16558896 |
T |
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