View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15024_high_20 (Length: 388)
Name: NF15024_high_20
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 373
Target Start/End: Original strand, 28797339 - 28797692
Alignment:
| Q |
19 |
ccttcaatataactaaaatttaatcaaaattatggtgaatttgtctggttgtgtaacactatatcattggaatttgaaaaactgaataannnnnnnnn-a |
117 |
Q |
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| T |
28797339 |
ccttcaatataactaaaatttattcaaaattatggtgaatatgtctggttgtataacactatatcattggaatttgaaaaactgaataatttttttttta |
28797438 |
T |
|
| Q |
118 |
ttgggactaacaggttgtatacattcttgatcaagtaagagcattagaggaagagttactacaaaagattgagttgcaaggccttaatgtgaagcctcag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28797439 |
ttgggactaacaggttgtatacattcttgatcaagtaagagcattagaggaagagttactccaaaagattgagttgcaaggccttaatgtgaagcctcag |
28797538 |
T |
|
| Q |
218 |
attcttgtggtatgctactaagtactaatacaaaaaattacaaataatgtataccaattattttannnnnnnnacaaattattatacttagcnnnnnnnn |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||| |
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| T |
28797539 |
attcttgtggtatgctactaagtactaatacaaaaaattacaaataatgtataccaattttttt--tttttttacaaattattatactcagcaaaaaatc |
28797636 |
T |
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| Q |
318 |
nnnnnnntattaaaccatcatattaatcttcaattttgttttgtttcctccctatg |
373 |
Q |
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| T |
28797637 |
caaaaaatattaaaccatcatattaatcttcaattttattttgtttcctctctatg |
28797692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 121 - 257
Target Start/End: Original strand, 28775814 - 28775950
Alignment:
| Q |
121 |
ggactaacaggttgtatacattcttgatcaagtaagagcattagaggaagagttactacaaaagattgagttgcaaggccttaatgtgaagcctcagatt |
220 |
Q |
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|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28775814 |
ggactaacaggtggtatatattcttgatcaagtaagagcattagaggaagagttactccaaaagattgagttgcaaggacttaatgtgaagcctcagatt |
28775913 |
T |
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| Q |
221 |
cttgtggtatgctactaagtactaatacaaaaaatta |
257 |
Q |
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| T |
28775914 |
cttgtggtatgctactaagtactaatacaaaaaatta |
28775950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 28775717 - 28775779
Alignment:
| Q |
19 |
ccttcaatataactaaaatttaatcaaaattatggtgaatttgtctggttgtgtaacactatat |
82 |
Q |
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||||||||||||||||||||| |||||| |||||||||||||||| | |||| |||||||||| |
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| T |
28775717 |
ccttcaatataactaaaatttg-tcaaaactatggtgaatttgtctagctgtgcaacactatat |
28775779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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