View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15024_high_21 (Length: 378)
Name: NF15024_high_21
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_high_21 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 12844424 - 12844663
Alignment:
| Q |
1 |
acaagttgctgctatggtacatgctgaagaagatgaagtccaatccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12844424 |
acaagttgctgctatggtacatgctgaagaagatgaagtccaatccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaa |
12844523 |
T |
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| Q |
101 |
tatgagtatgaaaatgacagctatgaagaaaaagaatacaaaaaagtggtgatgagcatgttgaagatttatcttgatagattttattgatgcttttatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12844524 |
tatgagtatgaaaatgacagctatgaagaaaaagaatacaaaaaagtggtgatgagcatgttgaatatttatcttgatagattttattgatgcttttatt |
12844623 |
T |
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| Q |
201 |
ttgagttggacttatgctttgaagaaagggaaaagaagaa |
240 |
Q |
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| T |
12844624 |
ttgagttggacttatgctttgaagaaagggaaaagaagaa |
12844663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 311 - 373
Target Start/End: Original strand, 12844734 - 12844799
Alignment:
| Q |
311 |
cattttgtgagttggatcatgtact---gttctatgttttgaagaatgagagatgaagcaagtttt |
373 |
Q |
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| T |
12844734 |
cattttgtgagttggatcatgtactactgttctatgttttgaagaatgagagatgaagcaagtttt |
12844799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 50438597 - 50438753
Alignment:
| Q |
1 |
acaagttgctgctatggtacatgctgaagaagatgaagtccaatccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50438597 |
acaagttgctgctatggtacatgctgaagaagatgaagtccaatccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaa |
50438696 |
T |
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| Q |
101 |
tatgagtatgaaaatgacagctatgaagaaaaagaatacaaaaaagtggtgatgagc |
157 |
Q |
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| T |
50438697 |
tatgagtatgaaaatgacagctatgaagaaaaagaatacaaaaaagtggtaatgagc |
50438753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 25098668 - 25098824
Alignment:
| Q |
1 |
acaagttgctgctatggtacatgctgaagaagatgaagtccaatccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25098668 |
acaagttgctgctatggtacatgctgaagaagatgaagtccaatccaaacaaactgaagaaaatgaagtccaagatgtgcacattgagaagttccccgaa |
25098767 |
T |
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| Q |
101 |
tatgagtatgaaaatgacagctatgaagaaaaagaatacaaaaaagtggtgatgagc |
157 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25098768 |
tatgagtatgaaaatgacagctatgaagaaaaagaatacaaaaaagtggtaatgagc |
25098824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 146; Significance: 8e-77; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 45148 - 45293
Alignment:
| Q |
1 |
acaagttgctgctatggtacatgctgaagaagatgaagtccaatccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45148 |
acaagttgctgctatggtacatgctgaagaagatgaagtccaatccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaa |
45247 |
T |
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| Q |
101 |
tatgagtatgaaaatgacagctatgaagaaaaagaatacaaaaaag |
146 |
Q |
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| T |
45248 |
tatgagtatgaaaatgacagctatgaagaaaaagaatacaaaaaag |
45293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 146; Significance: 8e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 27442213 - 27442068
Alignment:
| Q |
1 |
acaagttgctgctatggtacatgctgaagaagatgaagtccaatccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27442213 |
acaagttgctgctatggtacatgctgaagaagatgaagtccaatccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaa |
27442114 |
T |
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| Q |
101 |
tatgagtatgaaaatgacagctatgaagaaaaagaatacaaaaaag |
146 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27442113 |
tatgagtatgaaaatgacagctatgaagaaaaagaatacaaaaaag |
27442068 |
T |
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