View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15024_high_23 (Length: 363)
Name: NF15024_high_23
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 30240560 - 30240214
Alignment:
| Q |
1 |
aattttcattttcatctagttcgagtaaataatcaaaatcatactctagactgtcacatagacttggacaataataatcattatcattatcatga----- |
95 |
Q |
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| T |
30240560 |
aattttcattttcatatagttcgagtaaataatcaaaatcatactctagactgtcacatagacttggacaataataatcattatcattatcattatcatc |
30240461 |
T |
|
| Q |
96 |
-acatcataatatctagtaggagtattagggagctccgcataacttaaccagaccgtaagatcagaatgagtatacatcttcctttgactttgttgacaa |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30240460 |
aacatcataatatctagtaggagtattagggagctccgcataacttaaccagaccgtaagatcagaatgagtatacatcttcctttgactttgttgacaa |
30240361 |
T |
|
| Q |
195 |
gaattatcatgatcatagaaagtgtcatctacatcgtaatttgaaagccgtaagtatatgatctgatcttgagaccttttacccaatcttccactcaaat |
294 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30240360 |
gaattatcatgatcatagcaagtgtcatctacatcgtaatttgaaagccgtaagtatatgatctgatcttgacaccttttacccaatcttccactcaaat |
30240261 |
T |
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| Q |
295 |
caagattaagacattctcgcaaatcaagatcttcaagaagagggcat |
341 |
Q |
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| T |
30240260 |
caagattaagacattctcgcaaatcaagatcttcaagaagagggcat |
30240214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 191 - 337
Target Start/End: Complemental strand, 30236969 - 30236823
Alignment:
| Q |
191 |
acaagaattatcatgatcatagaaagtgtcatctacatcgtaatttgaaagccgtaagtatatgatctgatcttgagaccttttacccaatcttccactc |
290 |
Q |
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||||||||||||||||||||| || || |||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| |||| | |||||||| |
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| T |
30236969 |
acaagaattatcatgatcataccaattgccatctacatcgtaatttgaaagccgtaaatatatgatttgatcttgataccttttccccagttttccactc |
30236870 |
T |
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| Q |
291 |
aaatcaagattaagacattctcgcaaatcaagatcttcaagaagagg |
337 |
Q |
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||||| |||||||||||||||||||| |||||||||| ||||||||| |
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| T |
30236869 |
aaatctagattaagacattctcgcaagtcaagatctttaagaagagg |
30236823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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