View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15024_high_27 (Length: 333)
Name: NF15024_high_27
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 38 - 271
Target Start/End: Complemental strand, 22475696 - 22475478
Alignment:
| Q |
38 |
tcacaaaaagaattcattcgaatcaatgataattacaccaaaatcaaatcctgaattagtagcatgtttaccaaactcttaaaactcaaataaataagct |
137 |
Q |
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| T |
22475696 |
tcacaaaaagaattcattcgaatcaatgataattacaccaaaatcaaatcctgaattagca---------------tcttaaaactcaaataaataagct |
22475612 |
T |
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| Q |
138 |
aaactgaagattatcctaaagaactataagattattgaaagcattgttcaacttacatagatttgtgtttgtcttcagcgagaatagcattgttcaactg |
237 |
Q |
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| T |
22475611 |
aaactgaagattatcctaaagaactataagattattgaaagcattgttcaacttacatagatttgtgtttgtcttcagcgagaatagcattgttcaactg |
22475512 |
T |
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| Q |
238 |
gatgtcaaacctgtaaacaaatgatcaaaaccat |
271 |
Q |
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| T |
22475511 |
gatgtcaaacctgtaaacaaatcatcaaaaccat |
22475478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 22475741 - 22475713
Alignment:
| Q |
12 |
atgaagtcacaaaatttcttgtcttttca |
40 |
Q |
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| T |
22475741 |
atgaagtcacaaaatttcttgtcttttca |
22475713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 28170813 - 28170878
Alignment:
| Q |
189 |
cttacatagatttgtgtttgtcttcagcgagaatagcattgttcaactggatgtcaaacctgtaaa |
254 |
Q |
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| T |
28170813 |
cttacatagatttgtgcttatcttcagcgagaatggcattgttcaactggatatcaaacctgtaaa |
28170878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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