View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15024_high_3 (Length: 660)

Name: NF15024_high_3
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15024_high_3
NF15024_high_3
[»] chr2 (1 HSPs)
chr2 (13-641)||(34642170-34642797)


Alignment Details
Target: chr2 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 13 - 641
Target Start/End: Complemental strand, 34642797 - 34642170
Alignment:
Q  13 agcataggccacatatcattaaacgttttaattgtttttaggctcaagaattgcaacattggtcttccttccatttctgatttcttgaacaagtgtctat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34642797 agcataggccacatatcattaaacgttttaattgtttttaggctcaagaattgcaacattggtcttccttccatttttgatttcttgaacaagtgtctat 34642698  T
Q  113 ctatatatatgtttaagaccaagctttattctcattttagcttttaggtgagatttgttgatgggagtagaatgcaatgtgaaaatgggtcaagtaataa 212  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  34642697 ctatatatatgtttaagacaaagctttattctcattttagcttttaggtgagatgtgttgatgggagtagaatgtaatgtgaaaatgggtcaagtaataa 34642598  T
Q  213 accgtcattggaaaatttgataccatagttggttcgacccgttgaattgagaacttgtcaggatgaatcacatcaaacta-gattgaacgatttggatta 311  Q
    |||||||||||||||||||||| ||||||||||| || ||||||||| | |||||||||||| |||||||||||||| || | ||||| | |||| ||||    
T  34642597 accgtcattggaaaatttgatatcatagttggtttgatccgttgaatcgtgaacttgtcagggtgaatcacatcaaattagggttgaatggtttgaatta 34642498  T
Q  312 cgatttaacagatttgtttggttcgccgtataatatccgctctattttttaaaacattggttctaatacttatatcattcataaactaattcttgacaaa 411  Q
    || |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34642497 cggtttaacaggtttgtttggttcgccgtatagtatccgctctattttttaaaacattgcttctaatacttatatcattcataaactaattcttgacaaa 34642398  T
Q  412 cttatctaagtagaatagctagctgtgtaatcatatttcccttaaatgttacgagactcacatttagcaaacaataaatatttacaaccaaccaaacatg 511  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  34642397 cttatctaagtataatagctagctgtgtaatcatatttcccttaaatgttacgagactcacatttagcaaacaataaatatttacaaccgcccaaacatg 34642298  T
Q  512 aatatcatctgaaaaatgtatcaaaattgagtattcttggctaacatgttattggactttaagaatcagaagcgcaaacacttcatctattttatctcct 611  Q
    |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34642297 aatatcatctgaaaaatgtatctaaattgagtattcttggctaac--gttattggactttaagaatcagaagcgcaaacacttcatctattttatctcct 34642200  T
Q  612 tttcattatgtaaacaattgttcacgtaac 641  Q
    ||||||||||||||||||||||||||||||    
T  34642199 tttcattatgtaaacaattgttcacgtaac 34642170  T

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