View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15024_high_31 (Length: 323)
Name: NF15024_high_31
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_high_31 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-172; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 11 - 323
Target Start/End: Original strand, 6327076 - 6327388
Alignment:
| Q |
11 |
gaacaacattataaatagaaacagacggtggcgattcaacgacgaagtacctgaccttgatggttttggtattctcacctttaccaaaagttgtgtccaa |
110 |
Q |
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| T |
6327076 |
gaacaacattataaatagaaacagacggtggcgattcaacgacgaagtacctgaccttgatggttttggtattctcacctttaccaaaagttgtgtccaa |
6327175 |
T |
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| Q |
111 |
atcaatgtatcctttgactggtaaaccttttccaaaagtacccttgagaaatccttgacatggtttgagcattgattcttgtagtttcatctttaagaat |
210 |
Q |
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| T |
6327176 |
atcaatgtatcctttcactggtaaaccttttccaaaagtacccttgagaaatccttgacatggtttgagcattgattcttgtagtttcatcttcaagaat |
6327275 |
T |
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| Q |
211 |
gcggaccagtaaagaatgtccactttactcatagggttgacaaagactcttaaaacagagaagttgttgttgatttggagtttgattaccataggaagag |
310 |
Q |
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| T |
6327276 |
gcggaccagtaaagaatgtccactttactcatagggttgacaaagactcttaaaacagagaagttgttgttgatttggagtttgattaccataggaagag |
6327375 |
T |
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| Q |
311 |
caacatctggtcc |
323 |
Q |
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| T |
6327376 |
caacatctggtcc |
6327388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 318
Target Start/End: Original strand, 6317834 - 6318141
Alignment:
| Q |
11 |
gaacaacattataaatagaaacagacggtggcgattcaacgacgaagtacctgaccttgatggttttggtattctcacctttaccaaaagttgtgtccaa |
110 |
Q |
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| T |
6317834 |
gaacaacattaaaaatagaaaaagacggtgccgactcaacgacgaagtacctgaccttgatggttttggtattctcacctttaccaaaagttgtgtccaa |
6317933 |
T |
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| Q |
111 |
atcaatgtatcctttgactggtaaaccttttccaaaagtacccttgagaaatccttgacatggtttgagcattgattcttgtagtttcatctttaagaat |
210 |
Q |
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| T |
6317934 |
atcaatgtatcctttgactggtacaccttttccaaaagtatacttgagaaatgcttgacatggtttgagcattgattctgaaagtcccatcttcaagaat |
6318033 |
T |
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| Q |
211 |
gcggaccagtaaagaatgtccactttactcatagggttgacaaagactcttaaaacagagaagttgttgttgatttggagtttgattaccataggaagag |
310 |
Q |
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| T |
6318034 |
gcggaccagtagagaatgtccactttactgctagggttgacaaagactctcaaaacagagaagttgttgttgatttggagtttgattaccataggaagag |
6318133 |
T |
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| Q |
311 |
caacatct |
318 |
Q |
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| T |
6318134 |
caacatct |
6318141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 88 - 304
Target Start/End: Original strand, 6310135 - 6310348
Alignment:
| Q |
88 |
cctttaccaaaagttgtgtccaaatcaatgtatcctttgactggtaaaccttttccaaaagtacccttgagaaatccttgacatggtttgagcattgatt |
187 |
Q |
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| T |
6310135 |
cctttaccgaatgttgtgtccaaatcaacgtatcctttgaccggcacaccatcgccaaaagtacccttcagaaatccttcaaatggtttcagcattgact |
6310234 |
T |
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| Q |
188 |
cttgtagtttcatctttaagaatgcggaccagtaaagaatgtccactttactcatagggttgacaaagactcttaaaacagagaagttgttgttgatttg |
287 |
Q |
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||| ||| |||||| ||||||||||||||||||||||||| | | | || |||| ||| ||||||||||||||| ||||||||||||||| |
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| T |
6310235 |
cttccagtcccatcttcaagaatgcggaccagtaaagaatgttcgcgctgcttccctggttaacagagactcttaaaacag---tgttgttgttgatttg |
6310331 |
T |
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| Q |
288 |
gagtttgattaccatag |
304 |
Q |
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| T |
6310332 |
gagtttaataaccatag |
6310348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 229
Target Start/End: Original strand, 6323756 - 6323933
Alignment:
| Q |
51 |
gacgaagtacctgaccttgatggttttggtattctcacctttaccaaaagttgtgtccaaatcaatgtatcctttgactggtaaaccttttccaaaagta |
150 |
Q |
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| T |
6323756 |
gacgaagtacctcaccttgatcattttggc-ttccctcattttccgaatgttgtgtccaaatcaatatatcctttcactggtacaccatttccgataaca |
6323854 |
T |
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| Q |
151 |
cccttgagaaatccttgacatggtttgagcattgattcttgtagtttcatctttaagaatgcggaccagtaaagaatgt |
229 |
Q |
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| T |
6323855 |
cccttgagatatgcttctaatggtttcagcattgtctctaacagtcccatcttcaagaacgcggaccagtagagaatgt |
6323933 |
T |
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