View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15024_high_33 (Length: 310)
Name: NF15024_high_33
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_high_33 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 1905778 - 1905506
Alignment:
| Q |
1 |
gcaaaaagaaaaacataaggaaattaataaagggaagcataaagtgtagcttttgttgaaatcaagcgaagacaaggtgaatttgacaaaatcgtggcag |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
1905778 |
gcaaaaagaaaaacataaggaaattaataaacggaagcataaagtgtagcttttgttgaaatcaagcgaagacacggtgaatttgacaaaatcgtggaag |
1905679 |
T |
|
| Q |
101 |
caccgtgttgccaaaatcttcgcaacatgcgtgattttgtcaaactcaccgtcaatccaaacagacaccaagttatacacatatgttgtatgttgatgaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1905678 |
caccgtgttgccaaaatcttcgcaacatgcgtgattttgtcaaactcaccgtcaatccaaacagacaccaagttatatacatatgttgtatgttgatgaa |
1905579 |
T |
|
| Q |
201 |
tattgcaataaataaatgtgaaccttctacttctattgaaaagagtgacaggaagaagaacagaagtaccaac |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1905578 |
tattgcaataaataaatgtgaaccttctacttctattgaaaagagtgacaggaagaagaacagaagtaccaac |
1905506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 76 - 310
Target Start/End: Complemental strand, 1895860 - 1895630
Alignment:
| Q |
76 |
ggtgaatttgacaaaatcgtggcagcaccgtgttgccaaaat-cttcgcaacatgcgtgattttgtcaaactcaccgtcaatccaaacagacaccaagtt |
174 |
Q |
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| T |
1895860 |
ggtgaatttgagaaaatcttggtagcaccttgttgccaaaattctt----ata-gcgtgattctgtcaaactcaccgtcaattcaaacatttactaagtt |
1895766 |
T |
|
| Q |
175 |
atacacatatgttgtatgttgatgaatattgcaataaataaatgtgaaccttctacttctattgaaaagagtgacaggaagaagaacagaagtaccaaca |
274 |
Q |
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| T |
1895765 |
atataaatatgttgaatgttaatgaaaattgcaatagataaatgtgaaccttctacttctagtgaaaagtgtgacaggaagaagaacagaagtaccaaca |
1895666 |
T |
|
| Q |
275 |
gcataagcataagcaataaagacatgattgttcatc |
310 |
Q |
| |
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||||||| |||||||| ||||||||| ||||||||| |
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| T |
1895665 |
gcataagaataagcaacaaagacatggttgttcatc |
1895630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 230 - 310
Target Start/End: Complemental strand, 1911166 - 1911086
Alignment:
| Q |
230 |
cttctattgaaaagagtgacaggaagaagaacagaagtaccaacagcataagcataagcaataaagacatgattgttcatc |
310 |
Q |
| |
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|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1911166 |
cttctagtgaaaagagtgacagggagaagaacagaagtaccaacagcataagcataagcaataaagacatgattgttcatc |
1911086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 1884207 - 1884136
Alignment:
| Q |
239 |
aaaagagtgacaggaagaagaacagaagtaccaacagcataagcataagcaataaagacatgattgttcatc |
310 |
Q |
| |
|
|||| ||||| |||||| |||| |||||| |||||||||||||||| |||| ||||||||||||||||||| |
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| T |
1884207 |
aaaaaagtgataggaaggagaaaagaagttgcaacagcataagcataggcaacaaagacatgattgttcatc |
1884136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 1890851 - 1890780
Alignment:
| Q |
239 |
aaaagagtgacaggaagaagaacagaagtaccaacagcataagcataagcaataaagacatgattgttcatc |
310 |
Q |
| |
|
|||| ||||| |||||| |||| || |||||||| |||||||||||| |||| ||||||||||||||||||| |
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| T |
1890851 |
aaaaaagtgataggaaggagaatagcagtaccaatagcataagcataggcaacaaagacatgattgttcatc |
1890780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 310
Target Start/End: Complemental strand, 1878198 - 1878124
Alignment:
| Q |
236 |
ttgaaaagagtgacaggaagaagaacagaagtaccaacagcataagcataagcaataaagacatgattgttcatc |
310 |
Q |
| |
|
||||||| |||| |||||| ||||||||||||||||||||||||||||| |||| ||| |||| ||||||||| |
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|
| T |
1878198 |
ttgaaaaaggtgataggaaggagaacagaagtaccaacagcataagcataggcaacaaaaacatagttgttcatc |
1878124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 310
Target Start/End: Complemental strand, 1902083 - 1902041
Alignment:
| Q |
268 |
accaacagcataagcataagcaataaagacatgattgttcatc |
310 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1902083 |
accaacagcataagcataagcaataaagacatggttgttcatc |
1902041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 168
Target Start/End: Complemental strand, 47812762 - 47812728
Alignment:
| Q |
134 |
attttgtcaaactcaccgtcaatccaaacagacac |
168 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| |
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| T |
47812762 |
attttgtcaaactcaccgtcaatccaaacatacac |
47812728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 163
Target Start/End: Complemental strand, 20960890 - 20960857
Alignment:
| Q |
130 |
cgtgattttgtcaaactcaccgtcaatccaaaca |
163 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
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| T |
20960890 |
cgtgattttgtcaaactcaccgccaatccaaaca |
20960857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 38734255 - 38734223
Alignment:
| Q |
131 |
gtgattttgtcaaactcaccgtcaatccaaaca |
163 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
38734255 |
gtgattttgtcaaactcaccgtcaatctaaaca |
38734223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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