View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15024_high_35 (Length: 307)
Name: NF15024_high_35
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_high_35 |
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| [»] chr2 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 307
Target Start/End: Original strand, 1614879 - 1615170
Alignment:
| Q |
10 |
aagaaaataagaaccaagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1614879 |
aagaaaataagaaccaagagaacataagaaacaatctcaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaa |
1614978 |
T |
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| Q |
110 |
agcaacaggagaacaatacaaacagccggttaaaaagacaatannnnnnnnngtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaata |
209 |
Q |
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| T |
1614979 |
agcaacaggagaacaatacaaacagccggttaaaaagacaata-ttttttttgtaaattgagacaaaacgcatgaagacaaaggcaaagagaagaaaata |
1615077 |
T |
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| Q |
210 |
aaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacact |
307 |
Q |
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| T |
1615078 |
aaaccgatacggtgcagt-----tgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacact |
1615170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 14 - 307
Target Start/End: Complemental strand, 24456209 - 24455923
Alignment:
| Q |
14 |
aaataagaaccaagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaaagca |
113 |
Q |
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| T |
24456209 |
aaataagaaccaagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactatagagccaaactacaacaacctattcagaaaaacta |
24456110 |
T |
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| Q |
114 |
acaggagaacaatacaaacagccggttaaaaagacaatannnnnnnnngtaaattgagccaaaacaca-tgaagacaaaggcaaagagaagaaaataaaa |
212 |
Q |
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| T |
24456109 |
acaggagaacaatacaaacagccagttaaaaagacaata-atttttttgtaaattgagccaaaacacacagaaaacaaaggcaaagagaagaaaataaaa |
24456011 |
T |
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| Q |
213 |
ccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacact |
307 |
Q |
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| T |
24456010 |
ccgatatg-----gtgcagctggacc--acagagaaaaatcagaacatagggaggaaaaaataccactacgtagcagctgcaataccaaaacact |
24455923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 43228444 - 43228241
Alignment:
| Q |
14 |
aaataagaaccaagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaaagca |
113 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43228444 |
aaatgagaaccaagagaacataagaaactatcccaaagaaaacaaaccaaaatcaactacactaaagagccaaactacaacaacctattctaaaaaagca |
43228345 |
T |
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| Q |
114 |
acaggagaacaatacaaacagccggttaaaaagacaatannnnnnnnngtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaac |
213 |
Q |
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| T |
43228344 |
acaggagaccaatacaaacagccagttaaaaagacagta-ttttttttgtaaattgagccaaaacacacgaagaccaaggcaaagagaagaaagtaaaac |
43228246 |
T |
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| Q |
214 |
cgata |
218 |
Q |
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||||| |
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| T |
43228245 |
cgata |
43228241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 14839323 - 14839275
Alignment:
| Q |
170 |
agccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgata |
218 |
Q |
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| T |
14839323 |
agccaaaacacttgaagacagaggaaaagagaagaaaataaaaccgata |
14839275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 162 - 307
Target Start/End: Original strand, 49234306 - 49234446
Alignment:
| Q |
162 |
gtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacg |
261 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| | |||||||| |||| ||| ||| |||||||||||| |
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| T |
49234306 |
gtaaattgagccaaaacacatgaagaccaaggcaaagagaagaaattaaaaccaatatg-----ttgcagctggaacacaaatagacaaatcagaacaca |
49234400 |
T |
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| Q |
262 |
gggaagaaaaaatgccactacatagcagctgcaataccaaaacact |
307 |
Q |
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| T |
49234401 |
gggaggaaaaaatgccactatgtagcagctgcagtaccaaaacact |
49234446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 162 - 307
Target Start/End: Original strand, 49233735 - 49233875
Alignment:
| Q |
162 |
gtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacg |
261 |
Q |
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||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| ||| | |||||||| |||| ||| ||| |||||| ||||| |
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| T |
49233735 |
gtaaattaagccaaaacacatgaagaccaaggcaaagagaagaaattaaaaccaatatg-----ttgcagctggaacacaaatagacaaatcaaaacaca |
49233829 |
T |
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| Q |
262 |
gggaagaaaaaatgccactacatagcagctgcaataccaaaacact |
307 |
Q |
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|||| |||| |||||||||| ||||||||| | |||||||||||| |
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| T |
49233830 |
gggaggaaagaatgccactatgtagcagctgtagtaccaaaacact |
49233875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 302
Target Start/End: Complemental strand, 50862741 - 50862607
Alignment:
| Q |
162 |
gtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacg |
261 |
Q |
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||||||||| ||||||||||||||||| ||||||||||||||||| |||||| ||| | |||||| || |||| ||| ||| |||||||||||| |
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| T |
50862741 |
gtaaattga-ccaaaacacatgaagaccaaggcaaagagaagaaattaaaactaatatgttgcagt-----tggaacacaaatagacaaatcagaacaca |
50862648 |
T |
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| Q |
262 |
gggaagaaaaaatgccactacatagcagctgcaataccaaa |
302 |
Q |
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|||| ||||||| ||||||| || |||||||| ||||||| |
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| T |
50862647 |
gggaggaaaaaacgccactatgtaccagctgcagtaccaaa |
50862607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 27962367 - 27962415
Alignment:
| Q |
170 |
agccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgata |
218 |
Q |
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||||||||||| |||||||| ||| |||||||||||||||||||||||| |
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| T |
27962367 |
agccaaaacacttgaagacagaggaaaagagaagaaaataaaaccgata |
27962415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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