View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15024_high_39 (Length: 287)

Name: NF15024_high_39
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15024_high_39
NF15024_high_39
[»] chr6 (4 HSPs)
chr6 (1-272)||(34350236-34350507)
chr6 (99-255)||(15688988-15689144)
chr6 (195-272)||(24544666-24544742)
chr6 (127-177)||(9373599-9373649)
[»] chr1 (2 HSPs)
chr1 (99-272)||(44782183-44782356)
chr1 (99-272)||(46679639-46679812)
[»] chr5 (8 HSPs)
chr5 (98-272)||(25725807-25725981)
chr5 (102-272)||(40382760-40382930)
chr5 (98-272)||(10410736-10410909)
chr5 (99-272)||(25502025-25502197)
chr5 (99-203)||(8081508-8081612)
chr5 (99-272)||(25506938-25507111)
chr5 (99-272)||(10412309-10412481)
chr5 (99-177)||(6742574-6742652)
[»] chr8 (6 HSPs)
chr8 (99-272)||(30634229-30634402)
chr8 (96-272)||(1175047-1175226)
chr8 (107-209)||(1173508-1173610)
chr8 (114-177)||(35674852-35674915)
chr8 (114-169)||(35673347-35673402)
chr8 (138-203)||(44687154-44687219)
[»] chr2 (12 HSPs)
chr2 (99-272)||(1015659-1015831)
chr2 (114-255)||(33187188-33187329)
chr2 (99-272)||(45035093-45035265)
chr2 (99-272)||(45033298-45033470)
chr2 (99-272)||(17308632-17308797)
chr2 (97-272)||(30191520-30191692)
chr2 (99-174)||(14007774-14007849)
chr2 (101-176)||(3372454-3372529)
chr2 (228-272)||(4399574-4399618)
chr2 (139-203)||(25302815-25302879)
chr2 (138-201)||(41602457-41602520)
chr2 (138-203)||(25306810-25306875)
[»] chr3 (6 HSPs)
chr3 (97-272)||(28133657-28133832)
chr3 (99-272)||(4602231-4602403)
chr3 (99-270)||(27682131-27682301)
chr3 (98-200)||(41874519-41874621)
chr3 (98-255)||(4609060-4609216)
chr3 (98-177)||(26666997-26667076)
[»] chr4 (4 HSPs)
chr4 (99-271)||(4847688-4847860)
chr4 (101-272)||(28395555-28395729)
chr4 (144-272)||(25054275-25054402)
chr4 (222-272)||(11809887-11809937)
[»] chr7 (3 HSPs)
chr7 (99-255)||(29924591-29924740)
chr7 (97-272)||(21464443-21464624)
chr7 (240-272)||(965025-965057)
[»] scaffold0570 (1 HSPs)
scaffold0570 (182-255)||(3016-3093)


Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 34350236 - 34350507
Alignment:
Q  1 agaataaagaaaaacatacccacatactactagtttattgggttataaaaaacatctttatattaaattaagaacaatcatacaagtgatttgaacattg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34350236 agaataaagaaaaacatacccacatactactagtttattgggttataaaaaaaatctttatattaaattaagaacaatcatacaagtgatttgaacattg 34350335  T
Q  101 ttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtataaaa 200  Q
    |||| ||||||| |||||||| |||||||||||||| ||| ||||| |||  || ||||||||| | |||||||||||| ||||||||||||||||||||    
T  34350336 ttataaatcaaaggattccatggttctaggtcaaatacaacggaaaaatagtttatgtaattctctttaggagtcattactaagaaacaattgtataaaa 34350435  T
Q  201 gatagtgaaatagtaaataggtgtagtttatatatagtgatttggagtaactaaccccctaactaactttct 272  Q
    ||||||||||||||| ||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||    
T  34350436 gatagtgaaatagtacataggtgtagtttatttataatgatttggagtaactaactccctaactaactttct 34350507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 99 - 255
Target Start/End: Complemental strand, 15689144 - 15688988
Alignment:
Q  99 tgttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattg--tat 196  Q
    |||||||||||||| ||||||||  ||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| |  |||| | || ||  ||     
T  15689144 tgttatgaatcaaaggattccatgattctaggtcaaatgcaatggaaagatagattgtgtaattctctcta-gagtcatcacaaagatagaaatgaataa 15689046  T
Q  197 aaaagatagtgaaatagtaaataggtgtagtttatatatagtgatttggagtaactaac 255  Q
    |||||||||  |||||||| ||||| |||| |||| |||||||||||||||||||||||    
T  15689045 aaaagatag-aaaatagtacataggagtagcttatttatagtgatttggagtaactaac 15688988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 195 - 272
Target Start/End: Complemental strand, 24544742 - 24544666
Alignment:
Q  195 ataaaagatagtgaaatagtaaataggtgtagtttatatatagtgatttggagtaactaaccccctaactaactttct 272  Q
    |||||||||| |||||||||| |||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||    
T  24544742 ataaaagata-tgaaatagtacataggtgtagcttatttatagtgatttggagtaactaactccctaactaactttct 24544666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 9373599 - 9373649
Alignment:
Q  127 taggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcat 177  Q
    |||||||||||||||||||||||| | ||||||||| | | ||||||||||    
T  9373599 taggtcaaatgcaatggaaagatagaatgtgtaattttctataggagtcat 9373649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 99 - 272
Target Start/End: Original strand, 44782183 - 44782356
Alignment:
Q  99 tgttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtataa 198  Q
    |||||||||| ||| |||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||    
T  44782183 tgttatgaattaaaggattccatggttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattactaagaaacaattgtataa 44782282  T
Q  199 aagatagtgaaatagtaaataggtgtagtttatatatagtgatttggagtaactaaccccctaactaactttct 272  Q
    |||||| |||||||||| |||||||||| |||| |||||||| |||||||||||||| ||||||||||||||||    
T  44782283 aagataatgaaatagtacataggtgtagcttatttatagtgacttggagtaactaactccctaactaactttct 44782356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 99 - 272
Target Start/End: Complemental strand, 46679812 - 46679639
Alignment:
Q  99 tgttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtataa 198  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||  |||||||||||||||||    
T  46679812 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattaccaagaaacaattgtataa 46679713  T
Q  199 aagatagtgaaatagtaaataggtgtagtttatatatagtgatttggagtaactaaccccctaactaactttct 272  Q
    |||||  |||| ||||| |||||||||| |||| |||||||| |||||||||||||| |||||||||| |||||    
T  46679712 aagatgatgaagtagtacataggtgtagcttatttatagtgacttggagtaactaactccctaactaattttct 46679639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 98 - 272
Target Start/End: Original strand, 25725807 - 25725981
Alignment:
Q  98 ttgttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtata 197  Q
    ||||||||||||||| |||||||| ||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||  |||||||||| |||||    
T  25725807 ttgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattaccaagaaacaatcgtata 25725906  T
Q  198 aaagatagtgaaatagtaaataggtgtagtttatatatagtgatttggagtaactaaccccctaactaactttct 272  Q
    ||||||| |||||||||| |||||||||  |||| |||||||| |||||||||||||| ||||||||||||||||    
T  25725907 aaagataatgaaatagtacataggtgtaacttatttatagtgacttggagtaactaactccctaactaactttct 25725981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 102 - 272
Target Start/End: Original strand, 40382760 - 40382930
Alignment:
Q  102 tatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtataaaag 201  Q
    ||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||| |||||    
T  40382760 tatgaatcaaaggattacattgttctaggtcaaatgcaatggaaagataaattgtgtaattctctctaggaatcattactaagaaacaattgtaaaaaag 40382859  T
Q  202 atagtgaaatagtaaataggtgtagtttatatatagtgatttggagtaactaaccccctaactaactttct 272  Q
    ||| |||||||||| |||||||||| |||| |||||||| |||||||| ||||| ||||||||||||||||    
T  40382860 ataatgaaatagtatataggtgtagcttatttatagtgacttggagtacctaactccctaactaactttct 40382930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 98 - 272
Target Start/End: Complemental strand, 10410909 - 10410736
Alignment:
Q  98 ttgttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtata 197  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    ||||  ||| || |||    
T  10410909 ttgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcatcccaaagatgcaaatgaata 10410810  T
Q  198 aaagatagtgaaatagtaaataggtgtagtttatatatagtgatttggagtaactaaccccctaactaactttct 272  Q
    |||||| ||||||||||| |||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||    
T  10410809 aaagat-gtgaaatagtacataggtgtagcttatttatagtgatttggagtaactaactccctaactaactttct 10410736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 99 - 272
Target Start/End: Original strand, 25502025 - 25502197
Alignment:
Q  99 tgttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtataa 198  Q
    |||||||||||| | |||||||| ||||||| |||||||||||||||| ||| ||||||||||||| ||||||||||||||| |||||||||||||||||    
T  25502025 tgttatgaatcagaggattccatggttctagatcaaatgcaatggaaatatagattgtgtaattctctctaggagtcattatcaagaaacaattgtataa 25502124  T
Q  199 aagatagtgaaatagtaaataggtgtagtttatatatagtgatttggagtaactaaccccctaactaactttct 272  Q
    |||||| || ||||||| |||| ||||  |||| |||||||| |||||||||||||| ||||||||||||||||    
T  25502125 aagata-tggaatagtacatagatgtaacttatttatagtgaattggagtaactaactccctaactaactttct 25502197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 99 - 203
Target Start/End: Complemental strand, 8081612 - 8081508
Alignment:
Q  99 tgttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtataa 198  Q
    |||||||||||||| | |||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||    
T  8081612 tgttatgaatcaaagggttccatggttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattactaagaaacaattgtataa 8081513  T
Q  199 aagat 203  Q
    |||||    
T  8081512 aagat 8081508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 99 - 272
Target Start/End: Original strand, 25506938 - 25507111
Alignment:
Q  99 tgttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtataa 198  Q
    |||||||||| ||| |||||||| ||| ||| |||||||||||||||||||| ||| ||||||||| ||| ||| ||||||  |||||||||||||||||    
T  25506938 tgttatgaataaaaggattccatggttttagatcaaatgcaatggaaagatagattatgtaattctctctgggattcattacaaagaaacaattgtataa 25507037  T
Q  199 aagatagtgaaatagtaaataggtgtagtttatatatagtgatttggagtaact-aaccccctaactaactttct 272  Q
    || ||| || ||||||| |||||||||| |||| |||||||| ||||||||||| ||| |||||| |||||||||    
T  25507038 aaaata-tggaatagtacataggtgtagcttatttatagtgaattggagtaactaaactccctaagtaactttct 25507111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 99 - 272
Target Start/End: Complemental strand, 10412481 - 10412309
Alignment:
Q  99 tgttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtataa 198  Q
    |||||| ||| ||| |||| ||| ||| ||||||||||||||| |||||||| ||||||||||| | |||| || | || |  ||||  ||| || ||||    
T  10412481 tgttataaattaaaggatttcatggttttaggtcaaatgcaatcgaaagatagattgtgtaattttctctaagaattatcacaaagatgcaaatgaataa 10412382  T
Q  199 aagatagtgaaatagtaaataggtgtagtttatatatagtgatttggagtaactaaccccctaactaactttct 272  Q
    |||||| |||||||||| |||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||    
T  10412381 aagata-tgaaatagtacataggtgtagcttatttatagtgatttggagtaactaactccctaactaactttct 10412309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 6742652 - 6742574
Alignment:
Q  99 tgttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcat 177  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |||| |||||||    
T  6742652 tgttatgaatcaaacgattccatagttctagatcaaatgcaatggaaagatagattgtgtatttctctctacgagtcat 6742574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 7e-58; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 99 - 272
Target Start/End: Original strand, 30634229 - 30634402
Alignment:
Q  99 tgttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtataa 198  Q
    |||||||||||||| ||||| || ||| |||||||||||||||||||||||| ||| ||||||||| |||| ||||||||| ||||||||||||||||||    
T  30634229 tgttatgaatcaaaggattctatggttttaggtcaaatgcaatggaaagatagattctgtaattctctctatgagtcattactaagaaacaattgtataa 30634328  T
Q  199 aagatagtgaaatagtaaataggtgtagtttatatatagtgatttggagtaactaaccccctaactaactttct 272  Q
    |||||| |||||||||| |||||||||| |||| |||||||| |||||||||||||| ||||||||||||||||    
T  30634329 aagataatgaaatagtacataggtgtagcttatttatagtgacttggagtaactaactccctaactaactttct 30634402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 96 - 272
Target Start/End: Complemental strand, 1175226 - 1175047
Alignment:
Q  96 cattgttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcattatta---agaaacaatt 192  Q
    ||||||||||||| ||| ||||| || ||||||||||||||| |||| ||||||| ||||||||||| |||||||||||||||||||   ||||||||||    
T  1175226 cattgttatgaattaaaggattctatggttctaggtcaaatgtaatgaaaagatagattgtgtaattttttctaggagtcattattaccaagaaacaatt 1175127  T
Q  193 gtataaaagatagtgaaatagtaaataggtgtagtttatatatagtgatttggagtaactaaccccctaactaactttct 272  Q
    |||||||||||| |||||||||| |||||||||  |||| |||||||| |||||||||||||| ||| | ||||||||||    
T  1175126 gtataaaagataatgaaatagtacataggtgtaacttatttatagtgacttggagtaactaactccccacctaactttct 1175047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 1173610 - 1173508
Alignment:
Q  107 atcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtataaaagatagt 206  Q
    |||||| ||||||||| |||||| |||||||||||| ||| ||| ||||| ||||||| ||||||||||||||  ||||||||||||||||||||||| |    
T  1173610 atcaaaggattccataattctagatcaaatgcaatgaaaaaatagattgtataattctctctaggagtcattaccaagaaacaattgtataaaagataat 1173511  T
Q  207 gaa 209  Q
    |||    
T  1173510 gaa 1173508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 35674852 - 35674915
Alignment:
Q  114 gattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcat 177  Q
    |||| ||| |||||| |||||||||||||||||| || ||||||||||||| ||||||||||||    
T  35674852 gattgcatggttctaagtcaaatgcaatggaaaggtagattgtgtaattctctctaggagtcat 35674915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 35673347 - 35673402
Alignment:
Q  114 gattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttcta 169  Q
    |||||||| |||||| ||||||||||||||||||||| ||||| ||||||| ||||    
T  35673347 gattccatggttctaagtcaaatgcaatggaaagatagattgtataattctctcta 35673402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 44687219 - 44687154
Alignment:
Q  138 caatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtataaaagat 203  Q
    ||||||||||||| | ||  |||| || ||||||| |||| | |||||||||||||||||||||||    
T  44687219 caatggaaagatagaatgcataatgctctctaggaatcatcactaagaaacaattgtataaaagat 44687154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 99 - 272
Target Start/End: Complemental strand, 1015831 - 1015659
Alignment:
Q  99 tgttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtataa 198  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||||||| ||||||||||||| ||| |||||| |||  |||||||||||||||||    
T  1015831 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctcttggagtcgttaccaagaaacaattgtataa 1015732  T
Q  199 aagatagtgaaatagtaaataggtgtagtttatatatagtgatttggagtaactaaccccctaactaactttct 272  Q
    |||||| || ||||||| |||||||| | |||| ||||||||||||||||||||||| || |||||||||||||    
T  1015731 aagata-tggaatagtacataggtgtggcttatttatagtgatttggagtaactaactccgtaactaactttct 1015659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 114 - 255
Target Start/End: Original strand, 33187188 - 33187329
Alignment:
Q  114 gattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtataaaagatagtgaaatag 213  Q
    |||||||| ||||||||||||||| |||||||||||| ||||||||||| | |||| |||||||||  ||||||||||||||||||||||| ||||||||    
T  33187188 gattccattgttctaggtcaaatgtaatggaaagatagattgtgtaattatctctatgagtcattaccaagaaacaattgtataaaagataatgaaatag 33187287  T
Q  214 taaataggtgtagtttatatatagtgatttggagtaactaac 255  Q
    || |||||||||| |||| |||||||| ||||||||||||||    
T  33187288 tacataggtgtagcttatttatagtgacttggagtaactaac 33187329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 99 - 272
Target Start/End: Complemental strand, 45035265 - 45035093
Alignment:
Q  99 tgttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtataa 198  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||||||| ||||| || |||| |||||||||||| |  ||||  ||| || ||||    
T  45035265 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtatagttctctctaggagtcatcacaaagatgcaaatgaataa 45035166  T
Q  199 aagatagtgaaatagtaaataggtgtagtttatatatagtgatttggagtaactaaccccctaactaactttct 272  Q
    |||||  ||||||| || |||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||    
T  45035165 aagat-ttgaaatattacataggtgtagcttatttatagtgatttggagtaactaactccctaactaactttct 45035093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 99 - 272
Target Start/End: Complemental strand, 45033470 - 45033298
Alignment:
Q  99 tgttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtataa 198  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||||||| ||||| ||||| | |||||||||||| |  ||||  ||| || ||||    
T  45033470 tgttatgaatcaaaagattccatggttctagatcaaatgcaatggaaagatagattgtataattttctctaggagtcatcacaaagatgcaaatgaataa 45033371  T
Q  199 aagatagtgaaatagtaaataggtgtagtttatatatagtgatttggagtaactaaccccctaactaactttct 272  Q
    |||||| |||| ||||| |||||||||| |||| || |||||||||| ||||||||| ||||||||||||||||    
T  45033370 aagata-tgaattagtacataggtgtagcttatttacagtgatttggggtaactaactccctaactaactttct 45033298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 99 - 272
Target Start/End: Complemental strand, 17308797 - 17308632
Alignment:
Q  99 tgttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtataa 198  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||||||| ||||||||||||  ||||||||||||||  |||||||||||||||||    
T  17308797 tgttatgaatcaaaggattccattgttctagatcaaatgcaatggaaagatagattgtgtaattcactctaggagtcattaccaagaaacaattgtataa 17308698  T
Q  199 aagatagtgaaatagtaaataggtgtagtttatatatagtgatttggagtaactaaccccctaactaactttct 272  Q
    |||||| ||       | | ||||||   |||| ||||||||||||||||||||||| ||||||||||||||||    
T  17308697 aagata-tg-------acaaaggtgtgacttatttatagtgatttggagtaactaactccctaactaactttct 17308632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 97 - 272
Target Start/End: Complemental strand, 30191692 - 30191520
Alignment:
Q  97 attgttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtat 196  Q
    |||||||||||||||| |||||||| ||||||| |||||| ||||| ||||||| ||| | ||||||| ||||  | ||||||  |||||||||||||||    
T  30191692 attgttatgaatcaaaggattccatggttctagatcaaatacaatgaaaagatagattatataattctctctaaaaatcattaccaagaaacaattgtat 30191593  T
Q  197 aaaagatagtgaaatagtaaataggtgtagtttatatatagtgatttggagtaactaaccccctaactaactttct 272  Q
    |||||||| | ||||| || | ||| ||  ||||| |||||||||||||  |||||||  ||||||||||||||||    
T  30191592 aaaagata-taaaata-tacacagg-gtgatttatttatagtgatttggcataactaaatccctaactaactttct 30191520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 99 - 174
Target Start/End: Complemental strand, 14007849 - 14007774
Alignment:
Q  99 tgttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagt 174  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||  ||||| ||||||| |||||||||    
T  14007849 tgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatggattgtctaattctctctaggagt 14007774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 3372454 - 3372529
Alignment:
Q  101 ttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtca 176  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| | ||||||| ||| |||||||    
T  3372454 ttatgaatcaaaagattccatagttctaggtcaaatacaatggaaagatagattctataattctctctgggagtca 3372529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 4399574 - 4399618
Alignment:
Q  228 ttatatatagtgatttggagtaactaaccccctaactaactttct 272  Q
    |||| |||||||| |||||||||||||| ||||||||||||||||    
T  4399574 ttatttatagtgagttggagtaactaactccctaactaactttct 4399618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 25302879 - 25302815
Alignment:
Q  139 aatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtataaaagat 203  Q
    |||||||||||| | ||  |||| || |||||||||||| | |||||||||||||||||||||||    
T  25302879 aatggaaagatagaatgcataatgctctctaggagtcatcactaagaaacaattgtataaaagat 25302815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 41602520 - 41602457
Alignment:
Q  138 caatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtataaaag 201  Q
    ||||||||||||| | ||  |||| || |||||||||||| | |||||||||||||||||||||    
T  41602520 caatggaaagatagaatgcataatgctctctaggagtcatcactaagaaacaattgtataaaag 41602457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 25306875 - 25306810
Alignment:
Q  138 caatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtataaaagat 203  Q
    ||||||||||||| | ||  |||| || |||| ||||||| | |||||||||||||||||||||||    
T  25306875 caatggaaagatagaatgcataatgctctctatgagtcatcactaagaaacaattgtataaaagat 25306810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 97 - 272
Target Start/End: Complemental strand, 28133832 - 28133657
Alignment:
Q  97 attgttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtat 196  Q
    |||||||||||||||| |||||||| ||||||| ||||||||||||||||| ||||||||||| |||| |||||||||||| |  ||||  |||||| ||    
T  28133832 attgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaaggtaaattgtgtagttctctctaggagtcatcacaaagatgcaattgaat 28133733  T
Q  197 aaaagatagtgaaatagtaaataggtgtagtttatatatagtgatttggagtaactaaccccctaactaactttct 272  Q
    ||||||| ||||||||||| |||||||||| |||| |||||||| |||||||||||||| | ||||||||||||||    
T  28133732 aaaagatggtgaaatagtacataggtgtagcttatttatagtgacttggagtaactaactctctaactaactttct 28133657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 99 - 272
Target Start/End: Complemental strand, 4602403 - 4602231
Alignment:
Q  99 tgttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtataa 198  Q
    |||||||||||||| |||||||| ||||||| ||||||||||||||||| |||||||| || |||| |||| ||||||| |  ||||  |||||  ||||    
T  4602403 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaaggtaaattgtatagttctctctatgagtcataacaaagatgcaattaaataa 4602304  T
Q  199 aagatagtgaaatagtaaataggtgtagtttatatatagtgatttggagtaactaaccccctaactaactttct 272  Q
    |||||| |||||||||| |||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||    
T  4602303 aagata-tgaaatagtacataggtgtagcttatttatagtgatttggagtaactaactccctaactaactttct 4602231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 99 - 270
Target Start/End: Complemental strand, 27682301 - 27682131
Alignment:
Q  99 tgttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtataa 198  Q
    |||||||||||||| |||||||| ||||||| ||||||||||||||||| ||||||||||| |||| |||||||||||| |  ||||  ||| || ||||    
T  27682301 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaaggtaaattgtgtagttctctctaggagtcatcacaaagatgcaaatgaataa 27682202  T
Q  199 aagatagtgaaatagtaaataggtgtagtttatatatagtgatttggagtaactaaccccctaactaacttt 270  Q
    ||||| ||| ||||||| |||||| | | |||| ||| ||||||||||||||||||| ||||||||||||||    
T  27682201 aagat-gtggaatagtacataggtcttgcttatttattgtgatttggagtaactaactccctaactaacttt 27682131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 98 - 200
Target Start/End: Complemental strand, 41874621 - 41874519
Alignment:
Q  98 ttgttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtata 197  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||  ||||||||||||||||    
T  41874621 ttgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatagattttgtaattctctctaggagtcattaccaagaaacaattgtata 41874522  T
Q  198 aaa 200  Q
    |||    
T  41874521 aaa 41874519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 98 - 255
Target Start/End: Complemental strand, 4609216 - 4609060
Alignment:
Q  98 ttgttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtata 197  Q
    ||||||||||||||| ||||| || ||||||| ||||||||||| ||||| |||||||| || |||| ||||| |||||| |  ||||  |||||| |||    
T  4609216 ttgttatgaatcaaaggattcaattgttctagatcaaatgcaattgaaaggtaaattgtatagttctctctagcagtcatcacaaagatgcaattgaata 4609117  T
Q  198 aaagatagtgaaatagtaaataggtgtagtttatatatagtgatttggagtaactaac 255  Q
    ||||||| |||||||||| |||||||||| |||| |||||||||||||||||||||||    
T  4609116 aaagata-tgaaatagtacataggtgtagcttatttatagtgatttggagtaactaac 4609060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 26666997 - 26667076
Alignment:
Q  98 ttgttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcat 177  Q
    |||| |||||||||| |||| ||| ||||||| |||||||| |||||||| || |||||||||||||  ||| |||||||    
T  26666997 ttgtcatgaatcaaaggatttcatggttctagatcaaatgcgatggaaaggtagattgtgtaattctccctaagagtcat 26667076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 99 - 271
Target Start/End: Original strand, 4847688 - 4847860
Alignment:
Q  99 tgttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtataa 198  Q
    |||||||||| ||| |||||||| ||||||||||||||| |||||||||||| ||| ||||||||| | ||| ||||||||  ||||||||||||||||     
T  4847688 tgttatgaattaaaggattccatggttctaggtcaaatgtaatggaaagatagattttgtaattctctatagaagtcattaccaagaaacaattgtatat 4847787  T
Q  199 aagatagtgaaatagtaaataggtgtagtttatatatagtgatttggagtaactaaccccctaactaactttc 271  Q
    |||||||||| |||||| |||| ||||| |||| |||||||| |||||||||||||| |||||||||||||||    
T  4847788 aagatagtgatatagtacatagatgtagcttatttatagtgacttggagtaactaactccctaactaactttc 4847860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 101 - 272
Target Start/End: Original strand, 28395555 - 28395729
Alignment:
Q  101 ttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcattatta----agaaacaattgtat 196  Q
    |||||||||||| |||||||| ||| |||||||||||||||||||||||| ||||||||||||| |||||||||||| |  |    ||| | || || ||    
T  28395555 ttatgaatcaaaggattccatggttttaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcatcacaaagatagatagaaatgaat 28395654  T
Q  197 aaaagatagtgaaatagtaaataggtgtagtttatatatagtgatttggagtaactaaccccctaactaactttct 272  Q
    |||||||| |||||||||| |  ||||||| |||| |||||||||||||||||| |||| |||||||||| |||||    
T  28395655 aaaagata-tgaaatagtacagtggtgtagcttatttatagtgatttggagtaaataactccctaactaattttct 28395729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 144 - 272
Target Start/End: Complemental strand, 25054402 - 25054275
Alignment:
Q  144 aaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtataaaagatagtgaaatagtaaataggtgtagtttatatatagtgattt 243  Q
    |||| |||||| ||||||||| ||| | |||||| |  ||||  |||||| ||||||||| ||||||||||| |||||||||| |||| |||||||||||    
T  25054402 aaaggtaaattatgtaattctctctggaagtcatcacaaagatgcaattgaataaaagat-gtgaaatagtacataggtgtagcttatttatagtgattt 25054304  T
Q  244 ggagtaactaaccccctaactaactttct 272  Q
    |||||||||||| ||||||||||| ||||    
T  25054303 ggagtaactaactccctaactaacgttct 25054275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 11809887 - 11809937
Alignment:
Q  222 tgtagtttatatatagtgatttggagtaactaaccccctaactaactttct 272  Q
    |||||||| | |||||||| |||||||||||||| ||||||||||||||||    
T  11809887 tgtagtttgtttatagtgacttggagtaactaactccctaactaactttct 11809937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 99 - 255
Target Start/End: Complemental strand, 29924740 - 29924591
Alignment:
Q  99 tgttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttctaggagtcattattaagaaacaattgtataa 198  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||| |||||||| |||||    
T  29924740 tgttattaatcaaaggattccatagttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattactaaaaaacaattatataa 29924641  T
Q  199 aagatagtgaaatagtaaataggtgtagtttatatatagtgatttggagtaactaac 255  Q
    |||||     ||||  |||||||||||| |||| |||||||| ||||||||||||||    
T  29924640 aagat-----aata--aaataggtgtagcttatttatagtgacttggagtaactaac 29924591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 97 - 272
Target Start/End: Complemental strand, 21464624 - 21464443
Alignment:
Q  97 attgttatgaatcaaacgattccatagttctaggtcaaatgcaatggaaagataaattgtgtaattctttct--aggagtcattattaag-----aaaca 189  Q
    |||||||| |||||||  ||||||| ||||||| |||||||||||||||||||| ||||||||||||| |||  |||||||||||  |||     |||      
T  21464624 attgttataaatcaaagaattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctctctaggagtcattacaaaggtagaaaatg 21464525  T
Q  190 attgtataaaagatagtgaaatagtaaataggtgtagtttatatatagtgatttggagtaactaaccccctaactaactttct 272  Q
    | || |||||||| ||| |||||||| ||| |||||| |||| || |||||||||||||||||||||||||||||||||||||    
T  21464524 aatgaataaaaga-agtaaaatagtacataagtgtagcttatttacagtgatttggagtaactaaccccctaactaactttct 21464443  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 965057 - 965025
Alignment:
Q  240 atttggagtaactaaccccctaactaactttct 272  Q
    |||||||||||||||| ||||||||||||||||    
T  965057 atttggagtaactaactccctaactaactttct 965025  T

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Target: scaffold0570 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 3016 - 3093
Alignment:
Q  182 aagaaacaattgtataaaag----atagtgaaatagtaaataggtgtagtttatatatagtgatttggagtaactaac 255  Q
    ||||||||||||||||||||    |||||||||||||| || |||||||  ||| |||||||| ||||||||||||||    
T  3016 aagaaacaattgtataaaagaaagatagtgaaatagtacatcggtgtagcatatttatagtgacttggagtaactaac 3093  T

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