View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15024_high_56 (Length: 215)

Name: NF15024_high_56
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15024_high_56
NF15024_high_56
[»] chr1 (17 HSPs)
chr1 (3-199)||(47718051-47718247)
chr1 (3-199)||(47760172-47760368)
chr1 (3-196)||(47713257-47713450)
chr1 (11-196)||(47745848-47746033)
chr1 (1-196)||(6521570-6521765)
chr1 (2-196)||(6506971-6507165)
chr1 (3-198)||(6523570-6523765)
chr1 (87-196)||(6512957-6513066)
chr1 (95-196)||(6517364-6517465)
chr1 (123-187)||(6500263-6500327)
chr1 (140-178)||(47772945-47772983)
chr1 (147-185)||(47777899-47777937)
chr1 (2-47)||(47778037-47778082)
chr1 (120-168)||(47673751-47673799)
chr1 (2-34)||(47781958-47781990)
chr1 (2-34)||(47788172-47788204)
chr1 (2-34)||(47811484-47811516)
[»] chr5 (4 HSPs)
chr5 (9-191)||(28856512-28856694)
chr5 (11-191)||(28831318-28831498)
chr5 (9-191)||(28861789-28861971)
chr5 (111-186)||(27371748-27371823)
[»] scaffold0341 (2 HSPs)
scaffold0341 (2-196)||(996-1190)
scaffold0341 (87-196)||(8735-8844)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 3 - 199
Target Start/End: Original strand, 47718051 - 47718247
Alignment:
Q  3 taccatccaattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagataacttcggcaaacgtcaggtttaacatctcctc 102  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  47718051 taccaaccaatcgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagacaacttcggcaaacgtcaggtttaacatctcctc 47718150  T
Q  103 tgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaagttagattggacaa 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47718151 tgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaagttagattggacaa 47718247  T

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Target: chr1; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 3 - 199
Target Start/End: Original strand, 47760172 - 47760368
Alignment:
Q  3 taccatccaattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagataacttcggcaaacgtcaggtttaacatctcctc 102  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||||||    
T  47760172 taccaaccaattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcgttgagacaactgcggcaaacgtcgggtttaacatctcctc 47760271  T
Q  103 tgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaagttagattggacaa 199  Q
    | ||||| |||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||    
T  47760272 tacagagtccaatggcgtttactttgtcagtgttttggccataagaaatattgtagaaaccgtagttgatttctgcgttggaagttagattggacaa 47760368  T

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Target: chr1; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 3 - 196
Target Start/End: Original strand, 47713257 - 47713450
Alignment:
Q  3 taccatccaattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagataacttcggcaaacgtcaggtttaacatctcctc 102  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||| |||||||||||||||||||    
T  47713257 taccaaccaattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagacgactgcggcaaacatcaggtttaacatctcctc 47713356  T
Q  103 tgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaagttagattgga 196  Q
    ||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||    
T  47713357 tgcagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaaaccgtagttgatttgagtgttggaagtgagattgga 47713450  T

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Target: chr1; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 47745848 - 47746033
Alignment:
Q  11 aattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagataacttcggcaaacgtcaggtttaacatctcctctgcagagg 110  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||| ||||||| ||| |||||||||||||||||||||||     
T  47745848 aattgcttctttttgggttggacaaagttttgtgagaagaactcttgaatcgttgagacaactgcggcaaaggtcgggtttaacatctcctctgcagagt 47745947  T
Q  111 ccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaagttagattgga 196  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||    
T  47745948 ccaatggcgtttactttatcagtgttttggccataagagaaattgtagaaaccgtagttgatttgagtgttggaagtgagattgga 47746033  T

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Target: chr1; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 6521765 - 6521570
Alignment:
Q  1 tgtaccatccaattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagataacttcggcaaacgtcaggtttaacatctcc 100  Q
    ||||||||||||||||||||||| ||||| ||||| ||| ||| ||||||||  ||||||  |||||  || || | ||| | |   |||| ||||||||    
T  6521765 tgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcc 6521666  T
Q  101 tctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaagttagattgga 196  Q
    ||| || || ||||  |||||||||||||||||||| |  ||||||||| |||| ||||||||||||||||| ||| |||||||||| ||| ||||    
T  6521665 tctacatagtccaatcgcgtttactttgtcagtgttgtttccataagaggaattatagaaaccgtagttgatatctttgttggaagtgagagtgga 6521570  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 6506971 - 6507165
Alignment:
Q  2 gtaccatccaattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagataacttcggcaaacgtcaggtttaacatctcct 101  Q
    |||||||||||||||||||||| | ||| ||||||||| ||| |||||  |  ||||||  | |||  || || | ||| | || ||||| |||||||||    
T  6506971 gtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcct 6507070  T
Q  102 ctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaagttagattgga 196  Q
    || || || ||||  |||||||||||||| ||||||  |||||||||| |||| |||||||||||||| || ||| |||||||||| ||| ||||    
T  6507071 ctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtgga 6507165  T

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Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 198
Target Start/End: Complemental strand, 6523765 - 6523570
Alignment:
Q  3 taccatccaattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagataacttcggcaaacgtcaggtttaacatctcctc 102  Q
    ||||| ||||||||||||||||||||||||||||| | |||||||      |||||| |||||||  ||||  | ||  |||  |  |||||||| ||||    
T  6523765 taccaaccaattgcttctttttggtttggacaaagctgtgtgagattgttacttgaaccattgaggcaactaagacactcgtttgtcttaacatcgcctc 6523666  T
Q  103 tgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaagttagattggaca 198  Q
    |||| || ||||  |||||||||||||  |||||||  || |  ||||||||||||||||||||||||||||  ||||||||||| ||| ||||||    
T  6523665 tgcaaagaccaattgcgtttactttgtttgtgttttcaccgtttgagaaattgtagaaaccgtagttgatttgcgtgttggaagtgagagtggaca 6523570  T

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Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 196
Target Start/End: Original strand, 6512957 - 6513066
Alignment:
Q  87 ggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaag 186  Q
    ||||| ||||||||||| || || ||||  |||||||||||||| ||||||   ||||||||| |||| ||||||||||||||||| ||| |||||||||    
T  6512957 ggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccataagaggaattatagaaaccgtagttgatatctttgttggaag 6513056  T
Q  187 ttagattgga 196  Q
    | ||| ||||    
T  6513057 tgagagtgga 6513066  T

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Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 95 - 196
Target Start/End: Original strand, 6517364 - 6517465
Alignment:
Q  95 atctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaagttagattg 194  Q
    |||||||||||| || ||||  ||||||||||||||  |||||  |||||||||| | || ||||||||||||||||||||| |||||||||| ||| ||    
T  6517364 atctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgagaatg 6517463  T
Q  195 ga 196  Q
    ||    
T  6517464 ga 6517465  T

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Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 6500263 - 6500327
Alignment:
Q  123 actttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaagt 187  Q
    ||||||||  |||||| |||||  || ||||||||||||||||||||||||||||||||||||||    
T  6500263 actttgtcgctgttttcgccatgtgaaaaattgtagaaaccgtagttgatttctgtgttggaagt 6500327  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 47772983 - 47772945
Alignment:
Q  140 gccataagagaaattgtagaaaccgtagttgatttctgt 178  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  47772983 gccatatgagaaattgtagaaaccgtagttgatttctgt 47772945  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 47777937 - 47777899
Alignment:
Q  147 gagaaattgtagaaaccgtagttgatttctgtgttggaa 185  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  47777937 gagaaattgtagaaaccgtaattgatttgtgtgttggaa 47777899  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 47778082 - 47778037
Alignment:
Q  2 gtaccatccaattgcttctttttggtttggacaaagttttgtgaga 47  Q
    |||||| ||||||||||| |||| |||||||||||||| |||||||    
T  47778082 gtaccaaccaattgcttcctttttgtttggacaaagttgtgtgaga 47778037  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 47673799 - 47673751
Alignment:
Q  120 tttactttgtcagtgttttggccataagagaaattgtagaaaccgtagt 168  Q
    |||||||||||||  | || |||||| ||||||||||||||||||||||    
T  47673799 tttactttgtcaggttcttcgccatacgagaaattgtagaaaccgtagt 47673751  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 47781990 - 47781958
Alignment:
Q  2 gtaccatccaattgcttctttttggtttggaca 34  Q
    ||||||||||||||||||||||| |||||||||    
T  47781990 gtaccatccaattgcttcttttttgtttggaca 47781958  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 47788204 - 47788172
Alignment:
Q  2 gtaccatccaattgcttctttttggtttggaca 34  Q
    ||||||||||||||||||||||| |||||||||    
T  47788204 gtaccatccaattgcttcttttttgtttggaca 47788172  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 47811516 - 47811484
Alignment:
Q  2 gtaccatccaattgcttctttttggtttggaca 34  Q
    ||||||||||||||||||||||| |||||||||    
T  47811516 gtaccatccaattgcttcttttttgtttggaca 47811484  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 191
Target Start/End: Original strand, 28856512 - 28856694
Alignment:
Q  9 ccaattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagataacttcggcaaacgtcaggtttaacatctcctctgcaga 108  Q
    |||||||||||||||| ||||||||||  || ||| ||||||||||||||||  || ||| |||| |||||| | |  || ||||||||||||||||| |    
T  28856512 ccaattgcttcttttttgtttggacaattttgtgttagaagaactcttgaattgttaagacaactgcggcaatcatttggattaacatctcctctgcata 28856611  T
Q  109 ggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaagttaga 191  Q
      || | ||||| ||||||||   ||| || |||  | ||||| ||||||||||||||| |||||||||||||||||||||||    
T  28856612 atcctatggcgtatactttgttgttgtcttcgccgaatgagaagttgtagaaaccgtaggtgatttctgtgttggaagttaga 28856694  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 11 - 191
Target Start/End: Original strand, 28831318 - 28831498
Alignment:
Q  11 aattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagataacttcggcaaacgtcaggtttaacatctcctctgcagagg 110  Q
    |||||||||||||||||||||||||  || ||| ||||||||||||||||  || |||||||  |||||| | |  || |||||||||||||| || |      
T  28831318 aattgcttctttttggtttggacaattttgtgttagaagaactcttgaattgttaagataacggcggcaatcatttggattaacatctcctctacataat 28831417  T
Q  111 ccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaagttaga 191  Q
    || | ||||| ||||||||   ||  || ||| || ||||| ||||||||||||||| |||||||||||||||||||||||    
T  28831418 cctatggcgtatactttgttgttgcctttgccgtatgagaagttgtagaaaccgtaggtgatttctgtgttggaagttaga 28831498  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 9 - 191
Target Start/End: Original strand, 28861789 - 28861971
Alignment:
Q  9 ccaattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagataacttcggcaaacgtcaggtttaacatctcctctgcaga 108  Q
    |||||||||||||||||||| |||||   || ||| ||||||||||||||||  || ||| |||| |||||| | |  || ||||||||||||||||| |    
T  28861789 ccaattgcttctttttggttaggacatttttgtgttagaagaactcttgaattgttaagacaactgcggcaatcatttggattaacatctcctctgcata 28861888  T
Q  109 ggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaagttaga 191  Q
      || | ||||| ||||||||   ||| || |||  | ||||| ||||||||||||||| |||||||||||||||||||||||    
T  28861889 atcctatggcgtatactttgttgttgtcttcgccgaatgagaagttgtagaaaccgtaggtgatttctgtgttggaagttaga 28861971  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 27371748 - 27371823
Alignment:
Q  111 ccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaag 186  Q
    |||| ||| |||| |||||| | || ||||||||| ||||||||||| ||||||||||| |||||||||| |||||    
T  27371748 ccaatggcctttattttgtctgggtgttggccatatgagaaattgtaaaaaccgtagttaatttctgtgtgggaag 27371823  T

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Target: scaffold0341 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 996 - 1190
Alignment:
Q  2 gtaccatccaattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagataacttcggcaaacgtcaggtttaacatctcct 101  Q
    |||||||||||||||||||||| | ||| ||||||||| ||| |||||  |  ||||||  | |||  || || | ||| | || ||||| |||||||||    
T  996 gtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcct 1095  T
Q  102 ctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaagttagattgga 196  Q
    || || || ||||  |||||||||||||| ||||||  |||||||||| |||| |||||||||||||| || ||| |||||||||| ||| ||||    
T  1096 ctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtgga 1190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 196
Target Start/End: Original strand, 8735 - 8844
Alignment:
Q  87 ggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaag 186  Q
    ||||| ||||||||||| || || ||||  |||||||||||||| ||||||  |||||||||| |||| |||||||||||||| || ||| |||||||||    
T  8735 ggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgttggaag 8834  T
Q  187 ttagattgga 196  Q
    | ||| ||||    
T  8835 tgagagtgga 8844  T

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