View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15024_high_58 (Length: 208)
Name: NF15024_high_58
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_high_58 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 4e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 26677671 - 26677846
Alignment:
| Q |
14 |
agataatacttcatagtttataagcgaagataatactcacttaatcggtttttatgttcaaccacaaattataaaatcatgtacattctaagcaggtaaa |
113 |
Q |
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| T |
26677671 |
agataatatttcatagtttataagcgaagataatactcacttaatcggtttttatgttcaaccacaaattataaaatcatgtacattttctgcaggtaaa |
26677770 |
T |
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| Q |
114 |
ttccaccaccggttcatttatttcttcgtaaagttcacgttcgttgttcaacttttcctcactgttggaatatgatgt |
191 |
Q |
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| T |
26677771 |
ttccaccaccggttcatttatttcttcgtaaagttcacgt--gttgttcaacttttcctcactgttggaatatgatgt |
26677846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 60 - 191
Target Start/End: Complemental strand, 26688524 - 26688391
Alignment:
| Q |
60 |
ggtttttatgttcaaccacaaattataaaatcatgtacattctaagcaggtaaattccaccaccggttcatttatttcttcgtaaagttcacgttcg--t |
157 |
Q |
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| T |
26688524 |
ggtttttatgctcaaccacaaattataaaatcatgtatatttcctgcatgtaaattccaccaccggttcatttatttcttcgtaaagttcacgttcgaat |
26688425 |
T |
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| Q |
158 |
tgttcaacttttcctcactgttggaatatgatgt |
191 |
Q |
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| T |
26688424 |
tattcaacttttccttactgttggaatgtgatgt |
26688391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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