View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15024_high_6 (Length: 577)
Name: NF15024_high_6
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 70 - 346
Target Start/End: Complemental strand, 9430615 - 9430339
Alignment:
| Q |
70 |
caagaattcctttcgttcagatacaatcaaaagtaacattccaagaaaaatcaatctctagttcaaaaggatagacaagaatcagaattcaacacactgt |
169 |
Q |
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||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9430615 |
caagaattcctttcgaccggatacaatcaaaaataacattccaagaaaaatcaatctctagttcaaaaggatagacaagaatcagaattcaacacactgt |
9430516 |
T |
|
| Q |
170 |
cgagatctgtgactcatttgaagcattttgttttgtgctaaaattaatatccaactaaaaggtatctttgattagtaagtggcatgttactataccaatt |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
9430515 |
cgagatctgtgactcatttgaagcattttgttttgtgctaaaattaatatccaactaaaaggtatctttgattaataattggcatgttactataccaatt |
9430416 |
T |
|
| Q |
270 |
cgtacaatgtcttagttcaaccataaagataacattcaaaatatgtataaagcaattataagtccattgtcaaaaaa |
346 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9430415 |
cgtacaatgtcttagttcaaccataaagataacattcaaaatatgtataaagcaattataagtccattgtcaaaaaa |
9430339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 132 - 346
Target Start/End: Complemental strand, 9411203 - 9410991
Alignment:
| Q |
132 |
tcaaaaggatagacaagaatcagaattcaacacactgtcgagatctgtgactcatttgaagcattttgttttgtgctaaaattaatatccaactaaaagg |
231 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| |||||| ||||||||| |||||||||| |
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| T |
9411203 |
tcaaaaggatagacaagaatcaaaattcaacacactgtcgagatctgcgactcatctgaagcattttgttctgtgctgaaattaataaataactaaaagg |
9411104 |
T |
|
| Q |
232 |
tatctttgattagtaagtggcatgttactataccaattcgtacaatgtcttagttcaaccataaagataacattcaaaatatgtataaagcaattataag |
331 |
Q |
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|| ||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
9411103 |
tagctttgattaagaagtggcatgttactatac--tttggtacaatgtcttagttcaaccataaagataacattcaaaatatgtatatagcaattagaaa |
9411006 |
T |
|
| Q |
332 |
tccattgtcaaaaaa |
346 |
Q |
| |
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|||||||||||||| |
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| T |
9411005 |
gccattgtcaaaaaa |
9410991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 222 - 458
Target Start/End: Complemental strand, 9419755 - 9419521
Alignment:
| Q |
222 |
aactaaaaggtatctttgattagtaagtggcatgttactataccaattcgtacaatgtcttagttcaaccataaagataacattcaaaatatgtataaag |
321 |
Q |
| |
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||||||||||| ||||||| | |||||||||||| ||||| | || | ||| |||||||||||| ||| ||||||||||||||||| |||||||||| |
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| T |
9419755 |
aactaaaaggtggctttgatcaataagtggcatgtaactattc---tttggacattgtcttagttcatccaaaaagataacattcaaaacatgtataaag |
9419659 |
T |
|
| Q |
322 |
caattataagtccattgtcaaaaa-aggaatcatagaattgaatgatactgattttctgacaattttggatcaaatatttatttatagtatatgtagcta |
420 |
Q |
| |
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||||||| | ||||||| ||||| |||||||||||||||| |||||||||||||| ||||| |||||||||||| |||| | |||||||||||||||| |
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| T |
9419658 |
caattatgaagccattgtaaaaaataggaatcatagaattgtatgatactgattttgtgacagatttggatcaaatttttaatgatagtatatgtagcta |
9419559 |
T |
|
| Q |
421 |
ccgtccaattgttttgattttgctccttacccatatga |
458 |
Q |
| |
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| ||||||||||||||||||||||||||||||| |||| |
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| T |
9419558 |
ctgtccaattgttttgattttgctccttacccagatga |
9419521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 132 - 411
Target Start/End: Complemental strand, 9437396 - 9437115
Alignment:
| Q |
132 |
tcaaaaggatagacaagaatcagaattcaacacactgtcgagatctgtgactcatttgaagcattttgttttgtgctaaaatt-aatatccaactaaaag |
230 |
Q |
| |
|
||||| |||||||| ||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| || ||| ||||||||| |
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| T |
9437396 |
tcaaacggatagaccagaatca-aattcaacacactgttgagatctgtgactcatctgaagcattttgttttgtgctaaaattaaaaatctaactaaaag |
9437298 |
T |
|
| Q |
231 |
gtatctttgattagtaagtggcatgttactataccaattcgtacaatgtcttagttcaaccataaagataacattcaaaatatgtataaa-------gca |
323 |
Q |
| |
|
||| ||||||||| |||||||||||||||||| | || ||||||||||||||||||||||||||||||| ||||||||||| |||||| || |
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| T |
9437297 |
gtagctttgattaataagtggcatgttactat---attttgtacaatgtcttagttcaaccataaagataagattcaaaatatttataaactataacaca |
9437201 |
T |
|
| Q |
324 |
attataagtccattgtcaaaaaaggaatcatagaattgaatgatactgattttctgacaattttggatcaaatatttatttatagtat |
411 |
Q |
| |
|
|| | || | | ||||||||||||||||||||||||| |||||| || || ||||| ||||||||||||||||| | ||||||| |
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| T |
9437200 |
ataagaaagctactgtcaaaaaaggaatcatagaattgtatgatattg--cttgtgacagatttggatcaaatatttaatgatagtat |
9437115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 203 - 320
Target Start/End: Complemental strand, 9440525 - 9440411
Alignment:
| Q |
203 |
tgtgctaaaattaatatccaactaaaaggtatctttgattagtaagtggcatgttactataccaattcgtacaatgtcttagttcaaccataaagataac |
302 |
Q |
| |
|
|||||| || |||||| | |||||||||||| ||||||||| |||||| ||||||||||||| || ||||||||||||||||||||| ||| |||||| |
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| T |
9440525 |
tgtgctgaagttaataactaactaaaaggtagctttgattaataagtgtcatgttactatac--ttttgtacaatgtcttagttcaacc-taacgataac |
9440429 |
T |
|
| Q |
303 |
attcaaaatatgtataaa |
320 |
Q |
| |
|
||||| |||||||||||| |
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| T |
9440428 |
attcagaatatgtataaa |
9440411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 9440560 - 9440523
Alignment:
| Q |
132 |
tcaaaaggatagacaagaatcagaattcaacacactgt |
169 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
9440560 |
tcaaaaggatagacaagaatcagaattcaacacactgt |
9440523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 9430693 - 9430634
Alignment:
| Q |
16 |
tgaaatgaatactcctcatgtcctttggnnnnnnngcaaaatcgctagaactgtcaagaa |
75 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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|
| T |
9430693 |
tgaaatgaatactcctcatggcctttggaaaaaaagcaaaatcgctagaactgtcaagaa |
9430634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 9437473 - 9437408
Alignment:
| Q |
70 |
caagaattcctttcgttcagatacaatcaaaagtaacattccaagaaaaatcaatctctagttcaa |
135 |
Q |
| |
|
||||| ||||||| ||| |||||||||||||||| |||||||||||| ||||||||||||||| |
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|
| T |
9437473 |
caagatttccttttattcggatacaatcaaaagtacgcttccaagaaaaaacaatctctagttcaa |
9437408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 9419822 - 9419782
Alignment:
| Q |
132 |
tcaaaaggatagacaagaatcagaattcaacacactgtcga |
172 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||| |
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| T |
9419822 |
tcaaaaggatagaccagaatcagaattcaacaaactgtcga |
9419782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 458
Target Start/End: Complemental strand, 9410841 - 9410804
Alignment:
| Q |
421 |
ccgtccaattgttttgattttgctccttacccatatga |
458 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||| |
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| T |
9410841 |
ccgtccaattgttttgattttactccttacctatatga |
9410804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 9411280 - 9411215
Alignment:
| Q |
70 |
caagaattcctttcgttcagatacaatcaaaagtaacattccaagaaaaatcaatctctagttcaa |
135 |
Q |
| |
|
||||| || |||| |||| |||||||||||| |||| |||||||||| | ||||||||||||||| |
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|
| T |
9411280 |
caagattttcttttgttcggatacaatcaaatgtaagcttccaagaaacagcaatctctagttcaa |
9411215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 554
Target Start/End: Complemental strand, 9419324 - 9419283
Alignment:
| Q |
513 |
acaagagctgaagtcaaaagcaaatcagatctatcaatatga |
554 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||| ||||||| |
|
|
| T |
9419324 |
acaagagctgaagtcaaaggcaaatcacatctattaatatga |
9419283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 9419899 - 9419834
Alignment:
| Q |
70 |
caagaattcctttcgttcagatacaatcaaaagtaacattccaagaaaaatcaatctctagttcaa |
135 |
Q |
| |
|
||||| ||||||| || | |||| ||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
9419899 |
caagatttccttttgtacggatatgatcaaaagtaagcttccaagaaaaagcaatctctagttcaa |
9419834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 243
Target Start/End: Original strand, 5793939 - 5794044
Alignment:
| Q |
138 |
ggatagacaagaatcagaattcaacacactgtcgagatctgtgactcatttgaagcattttgttttgtgctaaaattaatatccaactaaaaggtatctt |
237 |
Q |
| |
|
||||||||| ||||| ||| |||| ||||||| | ||| || |||||| | ||||| ||||||||||| ||||||||||| |||||||||||||| ||| |
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| T |
5793939 |
ggatagacaggaatcggaactcaatacactgttgtgataagtcactcatctaaagcaatttgttttgtgataaaattaataaccaactaaaaggtaactt |
5794038 |
T |
|
| Q |
238 |
tgatta |
243 |
Q |
| |
|
| |||| |
|
|
| T |
5794039 |
taatta |
5794044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 500 - 548
Target Start/End: Complemental strand, 41484655 - 41484607
Alignment:
| Q |
500 |
aaagcttcttacaacaagagctgaagtcaaaagcaaatcagatctatca |
548 |
Q |
| |
|
||||| ||| ||||||||||||||||||||| |||||||| |||||||| |
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|
| T |
41484655 |
aaagcctctcacaacaagagctgaagtcaaaggcaaatcaaatctatca |
41484607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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