View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15024_low_13 (Length: 503)
Name: NF15024_low_13
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 25 - 463
Target Start/End: Original strand, 46941953 - 46942387
Alignment:
| Q |
25 |
caaactactattttaacatgttaaaatacttattactccaatagtatagtattactctaaaatgaaaaggttttggcataatttgaaaaactaattaatt |
124 |
Q |
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| T |
46941953 |
caaactactattttaacatgttaaagtacttattactccaatagtatagtattactctaaaatgaaaaggttttggcataatttgaaaaactaattaatt |
46942052 |
T |
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| Q |
125 |
gttttattattaagtttattctattttgttcttgatgtgtttcagaaatatcgaaattttctacacctacatcaagaaatagctaaaatagagagttgaa |
224 |
Q |
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| T |
46942053 |
gttttattattaagtttattctattttgttcttgatgtgtttcagaaatatcgaaattttctacacctacatcaagaaatagctaaaatagagagctgaa |
46942152 |
T |
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| Q |
225 |
gagattgaaaagaaagcaaatagaacacctcttgcatttagacacc----aaataaataaagagtcttgatagtgggaaataactgcagctaatgtatac |
320 |
Q |
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| T |
46942153 |
gagattgaaaagaaagcaaatagaacacctcttgcatttagacaccaaataaataaataaagagtcttgatagtgggaaataactgcagctaatatatac |
46942252 |
T |
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| Q |
321 |
atgaagttaaggtcagggatgttaaattgagggaaccactactgagcaatgtcattactaagcaaaaccccacatcctcaataacaattaattagcatgt |
420 |
Q |
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| T |
46942253 |
atgaagttaa----------gttaaattgagggaaccactactgagcaatgtcattactaagcaaaaccccacatcctcaatgacaattaattagcatgt |
46942342 |
T |
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| Q |
421 |
gaggattcaagctcttcata--tttttcattgaacataaaccaca |
463 |
Q |
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| T |
46942343 |
gaggattcaagctcttcatatgtttttcattgaacataaaccaca |
46942387 |
T |
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