View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15024_low_15 (Length: 457)
Name: NF15024_low_15
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 44475427 - 44474985
Alignment:
| Q |
18 |
aagttgaatgttacaggagggtagccatcgttgtataaggtggcagactctggtatccaaccatctgttccaaacctaacgaagaacatactgcagattt |
117 |
Q |
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| T |
44475427 |
aagttgaatgttataggagggtagccatcgttgtataaggtggcagactctggtatccaaccatctgttccaaacctaacgaagaacatactgcagattt |
44475328 |
T |
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| Q |
118 |
tgcctatacaatttgctggtaccagatcaaatggattcgtcgtgcaccgcttgagagaggaaccccgcatactaggatctggacttgaaataatctgcgt |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44475327 |
tgcctatacaatttgcttgtaccagatcaaatggattcgtcgtgcaccgcttgagagaggaaccccgcatactaggatctggacttgaaataatctgcat |
44475228 |
T |
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| Q |
218 |
ttatacacgtgcatggatatcgaaccaatacatatatagttcagttcaaagaaaaaagattacatactccttatgttgcatatttatacatgtttatatc |
317 |
Q |
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| T |
44475227 |
ttatacacgtgcatggatatcgaaccaatacatatatagttcagttcaaagaaaaaagattacatactccttatgttgcatatttatacatgtttatatc |
44475128 |
T |
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| Q |
318 |
taagctatttttataacaaagttataataaagatttgtgttttcaaattagtttaaattgttttcataagtatg------------------agttcaaa |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
44475127 |
taagctatttttataacaaagttataataaagatttgtattttcaaattagtttaaattgttttcataagcatgtgaataagctgaaaatatagttcaaa |
44475028 |
T |
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| Q |
400 |
catgttataagatgttactgtaactctcataaatacttatctc |
442 |
Q |
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| T |
44475027 |
catgttataagatgttactgtaactctcataaatacttatctc |
44474985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 44485636 - 44485525
Alignment:
| Q |
18 |
aagttgaatgttacaggagggtagccatcgttgtataaggtggcagactctggtatccaaccatctgttccaaacctaacgaagaacatactgcagattt |
117 |
Q |
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||||||||||| |||||||||||| || ||| ||||||||||||||||||||| |||||||||| ||||||||||||||| |||| |||| ||||||||| |
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| T |
44485636 |
aagttgaatgtaacaggagggtagtcaccgtagtataaggtggcagactctggcatccaaccatttgttccaaacctaacaaagatcatattgcagattt |
44485537 |
T |
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| Q |
118 |
tgcctatacaat |
129 |
Q |
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| T |
44485536 |
tgcctatacaat |
44485525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 44471362 - 44471251
Alignment:
| Q |
18 |
aagttgaatgttacaggagggtagccatcgttgtataaggtggcagactctggtatccaaccatctgttccaaacctaacgaagaacatactgcagattt |
117 |
Q |
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|||||||| || | |||||||||| || || ||||| | |||| | ||||||||||||||||||| |||||| ||||| ||| |||| ||||||||| |
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| T |
44471362 |
aagttgaaggtgataggagggtagtcacggtggtatacgatggcggtctctggtatccaaccatctcttccaacactaacaaagtgcatattgcagattt |
44471263 |
T |
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| Q |
118 |
tgcctatacaat |
129 |
Q |
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| T |
44471262 |
ttcctatacaat |
44471251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 332
Target Start/End: Complemental strand, 44485396 - 44485347
Alignment:
| Q |
283 |
actccttatgttgcatatttatacatgtttatatctaagctatttttata |
332 |
Q |
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||||||| |||||||||||||||||| | | ||| ||||||||||||||| |
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| T |
44485396 |
actccttgtgttgcatatttatacatttctgtatataagctatttttata |
44485347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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