View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15024_low_18 (Length: 443)
Name: NF15024_low_18
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 20 - 432
Target Start/End: Complemental strand, 708798 - 708386
Alignment:
| Q |
20 |
tgctgacctaaaccaacagccctattcctatcctcaacaaacccaccaacaaattcaactccatcacccaaaaactgacctaaattcccactggcttgct |
119 |
Q |
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| T |
708798 |
tgctgacctaaaccaacagccctattcctatcctcaacaaacccaccaacaaattcaactccatcacccaaaaactgacctaaattcccactggcttgct |
708699 |
T |
|
| Q |
120 |
caaacctcccaccttgttgaccatccccttgttgccaaagattaaacctttcacggccaataccagcattaacaccaccattcacttcaacatcaccaaa |
219 |
Q |
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| T |
708698 |
caaacctcccaccttgttgaccatccccttgttgccaaagattaaacctttcacggccaataccagcattaacaccaccattcacttcaacatcaccaaa |
708599 |
T |
|
| Q |
220 |
aaccccttcaaatccctcaacaacaccatgatcatcaccaccaaacaaccctttacctccattatcatgatcatcaacaacaaccccatttcttattcca |
319 |
Q |
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| T |
708598 |
aacccctccaaatccctcaacaacaccatgatcatcaccaccaaacaaccctttacctccattatcatgatcatcaacaacaaccccatttcttattcca |
708499 |
T |
|
| Q |
320 |
ccattcttttcaacagaactactcgaattcctgcttttgtaatactcatgatgcctttcacattgggttttttcaggtaaagcttgctctttgcacctcc |
419 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
708498 |
ccattcttttcaacaaaactactcgaattcctgcttttgtaatactcatgatgcctttcacaatgggtttttccaggtaaagcttgctctttgcacctcc |
708399 |
T |
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| Q |
420 |
atccacctgaccc |
432 |
Q |
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| T |
708398 |
atccacctgaccc |
708386 |
T |
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