View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15024_low_2 (Length: 696)
Name: NF15024_low_2
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 21 - 535
Target Start/End: Complemental strand, 47037539 - 47037019
Alignment:
| Q |
21 |
acaatataaagtttaacctctcactct-----cttttattagcttgagcgtaaaagtgtgtgcaaatactcacaactcgcatattgacggtcattgctcc |
115 |
Q |
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| T |
47037539 |
acaatataaagtttaacctctcactctttgctcttttactagcttgagcgtaaaagtgtctgcaaatactcacaactcgcatattgacggttattgctcc |
47037440 |
T |
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| Q |
116 |
aattcgcgttgaggtagttgttgcttgacaaacaaaatcattctaatcactctatagcaatatgnnnnnnngaagacacttgcgttttttgtgaactatg |
215 |
Q |
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| T |
47037439 |
aattcgcattgaggcggttgttgcttgacaaacaaaatcattctaatcactctatatcaatatgttttttttaagacacttgcgttttttgtgaactata |
47037340 |
T |
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| Q |
216 |
ttatcttgatgatgattgatcaaaatatgtgcaaatgcaattaaccaatgtgaaaagaggccaacgaatgacgaagagataaagataggattcataggaa |
315 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47037339 |
ttatcttgatgatgatagatcaaaatatgtgcaaatgcaattaaccaatgtgaaaagaggccaacgaatgacgaagagataaagataggattcataggaa |
47037240 |
T |
|
| Q |
316 |
cggcagtggcccaacaaagcggcattagtttgaaacgtacnnnnnnnntt-aacattgattcggttgctaaaaacaagtggatattgagataagcaccaa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47037239 |
cggcagtggcccaacaaagcggcattagtttgaaacgtacaaaaaaaatttaacattgattcggttgctaaaaacaagtggatattgagataagcaccaa |
47037140 |
T |
|
| Q |
415 |
aagaggcagttgttgatatgtagaatgagcgagacaggtgaaagaatagtagtgctcaatctcaaagagtgttttggagcttaccattccatttgttttt |
514 |
Q |
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| T |
47037139 |
aagaggcagttgttgatatgtagaatgagcgagacaggtgaaagaatagtagtgctcaatctcaaagagtgttttggagcttaccataccatttgttttt |
47037040 |
T |
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| Q |
515 |
tatgagtagggaccatcaaga |
535 |
Q |
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| T |
47037039 |
tatgagtagggaccatcaaga |
47037019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 599 - 694
Target Start/End: Complemental strand, 47036954 - 47036859
Alignment:
| Q |
599 |
atgaaaaagaatcaggagcacaattacagagtcatgtcggtattatatttatgataaatgcagttatgtttatcggttgtcatgtgaatgctctct |
694 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47036954 |
atgaaaaagaatcaggagcacaattacagagtcatgtcggtattatatttatgataaatgcagttatgtttatcggttgtcatgtgaatgctctct |
47036859 |
T |
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