View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15024_low_20 (Length: 434)
Name: NF15024_low_20
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 6 - 333
Target Start/End: Original strand, 11654003 - 11654330
Alignment:
| Q |
6 |
tagataatactttcaatggctcaaataatggttcaagttttggtgtcaatcttgcttgtactagtggcagtggaagcagctactcctcctggaattgcta |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11654003 |
tagataatactttcaatggctcaaataatggttcaagttttggtgtcaatcttgcttgtgctagtggcagtggaagcagctactcctcctggaattgcta |
11654102 |
T |
|
| Q |
106 |
aagatcatgaatatggccatgcaagctgcaagataaagaaatacaaacattgctataatttggttcatgtatgccctaagttttgccctaatgattgtac |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11654103 |
aagatcatgaatatggccatgcaagctgcaagataaagaaatacaaacattgctataatttggttcatgtatgccctaagttttgccctaatgattgtac |
11654202 |
T |
|
| Q |
206 |
tgtggagtgtgcctcttgcaaacctatttgtgttgggggcacaaataatccttcacatgattatcctaccccttctacacctactccttcacatgattac |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11654203 |
tgtggagtgtgcctcttgcaaacctatttgtgttgggggcacaaataatccttcacatgattatcctaccccttctacacctactccttcacatgattac |
11654302 |
T |
|
| Q |
306 |
cctaccccttctactccccataacccac |
333 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
11654303 |
cctaccccttctactccccataacccac |
11654330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 6 - 333
Target Start/End: Original strand, 11667765 - 11668095
Alignment:
| Q |
6 |
tagataatactttcaat---ggctcaaataatggttcaagttttggtgtcaatcttgcttgtactagtggcagtggaagcagctactcctcctggaattg |
102 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11667765 |
tagataatactttcaataatggctcaaataatggttcaagttttggtgtcaatcttgcttgtgctagtggcagtggaagcagctactcctcctggaattg |
11667864 |
T |
|
| Q |
103 |
ctaaagatcatgaatatggccatgcaagctgcaagataaagaaatacaaacattgctataatttggttcatgtatgccctaagttttgccctaatgattg |
202 |
Q |
| |
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||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11667865 |
ctaaagatcatgagtatggccatgcaagctgtaagataaagaaatacaaacattgctataatttggttcatgtatgccctaagttttgccctaatgattg |
11667964 |
T |
|
| Q |
203 |
tactgtggagtgtgcctcttgcaaacctatttgtgttgggggcacaaataatccttcacatgattatcctaccccttctacacctactccttcacatgat |
302 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11667965 |
tactgtggagtgtgcctcttgcaaacctatttgtgttgggggcacaaataatccttcacatgattatcctaccccttctacacctactccttcacatgat |
11668064 |
T |
|
| Q |
303 |
taccctaccccttctactccccataacccac |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
11668065 |
taccctaccccttctactccccataacccac |
11668095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 11663393 - 11663612
Alignment:
| Q |
16 |
tttcaatggctcaaataatggttcaagttttggtgtcaatcttgcttgtactagtggcagtggaagcagctactcctcctggaattgctaaagatcatga |
115 |
Q |
| |
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||||||||||| ||||| | |||||| ||||||||||||| |||||||| ||| |||||||||||||||||| ||||||||||| |||||||| || || |
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| T |
11663393 |
tttcaatggctaaaatattagttcaaattttggtgtcaattttgcttgtgctaatggcagtggaagcagctagtcctcctggaaatgctaaaggtcgtgg |
11663492 |
T |
|
| Q |
116 |
atatggccatgcaagctgcaagataaagaaatacaaacattgctataatttggttcatgtatgccctaagttttgccctaatgattgtactgtggagtgt |
215 |
Q |
| |
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|||| |||||| ||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||| ||| ||| |||||||||||||||||||| |
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| T |
11663493 |
gaatggttatgcaacctgcaagataaagaagtacaaacattgctataattcggttcatgtatgtcctaagtcttgtccttatgattgtactgtggagtgt |
11663592 |
T |
|
| Q |
216 |
gcctcttgcaaacctatttg |
235 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
11663593 |
gcctcttgcaaacctatttg |
11663612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 6 - 235
Target Start/End: Complemental strand, 7345087 - 7344855
Alignment:
| Q |
6 |
tagataatactttcaatggctcaaataatggttcaagttttggtgtcaatcttgct---tgtactagtggcagtggaagcagctactcctcctggaattg |
102 |
Q |
| |
|
|||| |||| ||||||||||| || ||||||||||| |||||||||||| | || ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7345087 |
tagaaaatattttcaatggctaaattaatggttcaaactttggtgtcaataattctccttgtgctagtggcagtggaagcagctactcctcctggaattg |
7344988 |
T |
|
| Q |
103 |
ctaaagatcatgaatatggccatgcaagctgcaagataaagaaatacaaacattgctataatttggttcatgtatgccctaagttttgccctaatgattg |
202 |
Q |
| |
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||||||||| ||| |||| |||||||||||||||||||||| |||||||||||||||||| ||||||||| ||| ||||||| ||| ||| ||||||| |
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| T |
7344987 |
ctaaagatcgtgagcatggttatgcaagctgcaagataaagaagtacaaacattgctataatatggttcatgcatgtcctaagtcttgtccttatgattg |
7344888 |
T |
|
| Q |
203 |
tactgtggagtgtgcctcttgcaaacctatttg |
235 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| |
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|
| T |
7344887 |
cactgtggagtgtgcttcttgcaaaccaatttg |
7344855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 419
Target Start/End: Original strand, 11654384 - 11654425
Alignment:
| Q |
378 |
cctaatagctcttctccaccacataaccaacataattcatct |
419 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
11654384 |
cctaatagctcttctccaccacataaccaacataattcatct |
11654425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 419
Target Start/End: Original strand, 11668149 - 11668190
Alignment:
| Q |
378 |
cctaatagctcttctccaccacataaccaacataattcatct |
419 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
11668149 |
cctaatagctcttctccaccacataaccaacataattcatct |
11668190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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