View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15024_low_22 (Length: 409)
Name: NF15024_low_22
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Original strand, 25331564 - 25331955
Alignment:
| Q |
18 |
gtttttaatcctagggctgttcttccttgctttgtgattgtgtatagtgtgtaatttgtgatgaacaatgattatgagcttgatctaatggtcatgtgat |
117 |
Q |
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| T |
25331564 |
gtttttaatcctagggctgttcttccttgctttgtgattgtgtatagtgtgtaatttgtgatgaacaatgattatgagcttgatctaatggtcatgtgat |
25331663 |
T |
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| Q |
118 |
gatgagttgtaatcttaatttagtcaagtattttgtagttaaggaatccctttttgacataatccatgttattggatcattgtgcacacaaaattgtgta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25331664 |
gatgagttgtaatcttaatttagtcaagtattttgtagttaaggaatccctttttgacataatccatgttattggatcattgtgcacacaaaattgtgta |
25331763 |
T |
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| Q |
218 |
ttaaattgacacatcatgtggtatagttta------tgtgtgtgtgtttgaggtgaatgtcttggttatgtgcacaaaattttgtgcattagattggcac |
311 |
Q |
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||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
25331764 |
ttaaattgacacaccatgtggtatagtttatgtgtgtgtgtgtgtgtttgaggtgaatatcttggttatgtgcacaaaattttgtgcattagattggtac |
25331863 |
T |
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| Q |
312 |
atcatattgtatagtttgagtgtttgtattttaggtgaatctcttgattgtgtgtgattaaggttaccttttgcctagcttatgattttctt |
403 |
Q |
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|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25331864 |
atcatattgtatagtttgtgtgtttgtgttttaggtgaatctcttgattgtgtgtgattaaggttaccttttgcctagcttatgattttctt |
25331955 |
T |
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