View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15024_low_27 (Length: 360)
Name: NF15024_low_27
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 2 - 342
Target Start/End: Original strand, 28784032 - 28784365
Alignment:
| Q |
2 |
agattgagaactgtgtaaaactgcgtgctgttattacagtatcaaaacctggtccctttaaactaaggacaaaagtgtgaggcttatacaatgatcaaaa |
101 |
Q |
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| T |
28784032 |
agattgagaactgtgtaaaactgcgtgctattattagagtatc------tggtccctttaaactaaggacaaaagtgtgaggcttatacaatgatcaaaa |
28784125 |
T |
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| Q |
102 |
tgaacaatacatnnnnnnnnnnnnnnnnnnnggttgcgtactagagttggcatgtcaggtagggcctaagctacaagcatttatccctttagcctcgaat |
201 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28784126 |
tgaacaatacataaaaaataaaaataaaaa-ggttgcgtactagagttggcatgtcaggtagggcctaagctacaagcatttatccctttagcctcgaat |
28784224 |
T |
|
| Q |
202 |
gagggtatgttgttcacttgttctgatacaacaaaaaagtctcttattttttgagaaatcgaggctagggtagcttatatataaacacatacaaaccact |
301 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28784225 |
gaggatatgttgttcacttgttctgatacaacaaaaaagtctcttattttttgagaaatcgaggctagggtagcttatatataaacacatacaaaccact |
28784324 |
T |
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| Q |
302 |
acccattacaaaggacaaaacatgaaggcttatgtaacatc |
342 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
28784325 |
acccattacaaaggacaaaacatgaaggcttatgtaacatc |
28784365 |
T |
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