View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15024_low_28 (Length: 346)

Name: NF15024_low_28
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15024_low_28
NF15024_low_28
[»] chr3 (9 HSPs)
chr3 (18-330)||(8074570-8074889)
chr3 (211-278)||(25408824-25408891)
chr3 (197-253)||(4741045-4741101)
chr3 (217-281)||(18650959-18651022)
chr3 (217-281)||(18690384-18690447)
chr3 (191-271)||(37537207-37537287)
chr3 (208-250)||(6926008-6926050)
chr3 (197-250)||(12947907-12947960)
chr3 (204-273)||(45966949-45967018)
[»] chr4 (13 HSPs)
chr4 (21-253)||(19846394-19846630)
chr4 (191-271)||(13137120-13137200)
chr4 (98-243)||(30972395-30972544)
chr4 (217-281)||(5727189-5727252)
chr4 (209-276)||(13608922-13608989)
chr4 (217-281)||(5761052-5761115)
chr4 (191-247)||(10552678-10552734)
chr4 (64-176)||(13157340-13157452)
chr4 (67-121)||(22495500-22495554)
chr4 (214-268)||(22653350-22653404)
chr4 (191-253)||(52578024-52578086)
chr4 (209-270)||(12115053-12115114)
chr4 (76-121)||(13609080-13609125)
[»] chr2 (13 HSPs)
chr2 (56-280)||(45131096-45131324)
chr2 (205-270)||(27009252-27009317)
chr2 (196-269)||(40638784-40638857)
chr2 (61-189)||(2167557-2167685)
chr2 (206-253)||(8090523-8090570)
chr2 (191-253)||(20948148-20948210)
chr2 (191-273)||(21578644-21578726)
chr2 (70-121)||(12606776-12606827)
chr2 (55-121)||(30505615-30505681)
chr2 (214-271)||(38409050-38409107)
chr2 (191-271)||(841527-841607)
chr2 (191-247)||(24739857-24739913)
chr2 (194-270)||(36176622-36176698)
[»] chr1 (11 HSPs)
chr1 (96-253)||(40708441-40708601)
chr1 (206-274)||(23997167-23997235)
chr1 (191-253)||(26260791-26260853)
chr1 (206-279)||(52626561-52626634)
chr1 (191-269)||(15259440-15259518)
chr1 (206-253)||(32160124-32160171)
chr1 (191-253)||(27363752-27363814)
chr1 (70-133)||(36098741-36098804)
chr1 (203-249)||(44675147-44675193)
chr1 (208-250)||(48973708-48973750)
chr1 (94-134)||(31069584-31069624)
[»] chr8 (5 HSPs)
chr8 (217-281)||(33282881-33282945)
chr8 (203-278)||(8462485-8462560)
chr8 (97-176)||(39435531-39435610)
chr8 (190-247)||(38685799-38685856)
chr8 (71-119)||(43776134-43776182)
[»] chr5 (9 HSPs)
chr5 (197-253)||(16610614-16610670)
chr5 (206-270)||(26778699-26778763)
chr5 (192-269)||(31706406-31706483)
chr5 (198-258)||(704507-704567)
chr5 (216-270)||(32252184-32252238)
chr5 (217-253)||(29651796-29651832)
chr5 (61-176)||(19315081-19315196)
chr5 (191-250)||(29994658-29994717)
chr5 (208-250)||(21042006-21042048)
[»] chr7 (5 HSPs)
chr7 (191-270)||(17116383-17116462)
chr7 (206-253)||(47543481-47543528)
chr7 (209-276)||(9628257-9628324)
chr7 (76-121)||(9628121-9628166)
chr7 (191-271)||(40616713-40616793)
[»] chr6 (8 HSPs)
chr6 (203-253)||(11324519-11324569)
chr6 (61-258)||(17292758-17292958)
chr6 (206-253)||(32196814-32196861)
chr6 (67-137)||(9907070-9907140)
chr6 (205-270)||(34714969-34715034)
chr6 (61-121)||(5667498-5667558)
chr6 (208-250)||(5667365-5667407)
chr6 (217-270)||(16853073-16853126)
[»] scaffold0795 (1 HSPs)
scaffold0795 (191-274)||(2198-2281)
[»] scaffold0047 (2 HSPs)
scaffold0047 (205-253)||(64284-64332)
scaffold0047 (97-137)||(64404-64444)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 8074889 - 8074570
Alignment:
Q  18 ctttcaatttaattttgttgggggtatcgcatggaagcggtgctcaatattacaggtcatttgatttgcaacattttgggaaatttggaatgagagaaat 117  Q
    ||||||||||||||||||||||||||||||| |||  | |||||||||||||||||||||||| ||||||||||||||  || ||||||| |||||||||    
T  8074889 ctttcaatttaattttgttgggggtatcgcagggacacagtgctcaatattacaggtcatttggtttgcaacattttgaaaattttggaaggagagaaat 8074790  T
Q  118 aacatgttatttaatggcaaataatgcttagttatgcagattgttgacaaaattaagtctcaaactttcatg----cgaaggtgaagtatgcttctcttt 213  Q
    |||| |||||||||||||||| |||||| |||| |||||||||||||||| |||||||||||||||||||||     ||| |||||||||||||||||||    
T  8074789 aacaggttatttaatggcaaagaatgctcagttgtgcagattgttgacaagattaagtctcaaactttcatgtggttgaatgtgaagtatgcttctcttt 8074690  T
Q  214 ccttcaattatcatg---ggtgctggcttagtccgtttaccatactggatataggctaatttttattttctcctattcagttctattttgttcttgtata 310  Q
    |||||||||||||||   |||| ||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||| |||    
T  8074689 ccttcaattatcatgggtggtggtggcttagtccgtttaccatactagatatagactagtttttattttctcctattcagttctattttgttcttgcata 8074590  T
Q  311 gcctgtagcttgtatatatt 330  Q
    ||||||||||||||||||||    
T  8074589 gcctgtagcttgtatatatt 8074570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 278
Target Start/End: Original strand, 25408824 - 25408891
Alignment:
Q  211 tttccttcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaatttttattt 278  Q
    ||||||||||||||||||| || ||||||||||| ||||||||  ||| |||||||||||| ||||||    
T  25408824 tttccttcaattatcatggttggtggcttagtccatttaccatgttgggtataggctaattgttattt 25408891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 4741045 - 4741101
Alignment:
Q  197 gaagtatgcttctctttccttcaattatcatgggtgctggcttagtccgtttaccat 253  Q
    |||||||  ||||||| |||||||||| |||||||| ||||||||||||||||||||    
T  4741045 gaagtatatttctcttcccttcaattaccatgggtgatggcttagtccgtttaccat 4741101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 18650959 - 18651022
Alignment:
Q  217 tcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaatttttattttct 281  Q
    ||||||||||||| || ||||| |||| |||||||||||||| |||| ||||||| |||||||||    
T  18650959 tcaattatcatggttgatggctaagtctgtttaccatactgggtata-gctaattgttattttct 18651022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 18690384 - 18690447
Alignment:
Q  217 tcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaatttttattttct 281  Q
    ||||||||||||| || ||||| |||| |||||||||||||| |||| ||||||| |||||||||    
T  18690384 tcaattatcatggttgatggctgagtctgtttaccatactgggtata-gctaattgttattttct 18690447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 271
Target Start/End: Complemental strand, 37537287 - 37537207
Alignment:
Q  191 gaaggtgaagtatgcttctctttccttcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaatt 271  Q
    |||||||||||  ||||||||| |||| | ||||||||| || |||||||  |||||| ||||||| | ||||||||||||    
T  37537287 gaaggtgaagttcgcttctcttccctttacttatcatggttggtggcttaacccgttttccatactcggtataggctaatt 37537207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 250
Target Start/End: Original strand, 6926008 - 6926050
Alignment:
Q  208 ctctttccttcaattatcatgggtgctggcttagtccgtttac 250  Q
    ||||| |||| |||||||||||||| |||||||||||||||||    
T  6926008 ctcttccctttaattatcatgggtggtggcttagtccgtttac 6926050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 12947960 - 12947907
Alignment:
Q  197 gaagtatgcttctctttccttcaattatcatgggtgctggcttagtccgtttac 250  Q
    ||||| ||| |||||||||||||||||  ||||||| ||| |||||||||||||    
T  12947960 gaagtttgcctctctttccttcaattactatgggtggtggtttagtccgtttac 12947907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 45967018 - 45966949
Alignment:
Q  204 gcttctctttccttcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaatttt 273  Q
    ||||||||| | ||||| |||||||| || ||||| | |||||||||||| || | ||||||||||||||    
T  45967018 gcttctcttcctttcaactatcatggttggtggctaaatccgtttaccattcttggtataggctaatttt 45966949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 19846394 - 19846630
Alignment:
Q  21 tcaatttaattttgttgggggtatcgcatggaagcggtgctcaatattacaggtcatttgatttgcaacattttgggaaatttggaatgagagaaataac 120  Q
    |||||||| ||||||| |||| || ||| ||| | ||||||| || ||| ||||||| || ||||||| | ||||| |||| || || || | ||||||     
T  19846394 tcaatttagttttgttaggggcattgcaaggacgaggtgctctattttagaggtcatatggtttgcaatagtttggaaaatatgaaaggaaataaataat 19846493  T
Q  121 atgttatttaatggcaaataatgcttagttatgcagattgttgacaaaattaagtctcaaactttcatgcg----aaggtgaagtatgcttctctttcct 216  Q
    | ||||||| |||| ||| |||| | | ||||||||||||||||||| ||||||||||| ||||||||| |    ||||||||||||||||||||| |||    
T  19846494 aggttatttgatggtaaagaatggtcaattatgcagattgttgacaagattaagtctcatactttcatgtgtttaaaggtgaagtatgcttctcttccct 19846593  T
Q  217 tcaattatcatgggtgctggcttagtccgtttaccat 253  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  19846594 tcaattatcatgggtggtggattagtccgtttaccat 19846630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 271
Target Start/End: Original strand, 13137120 - 13137200
Alignment:
Q  191 gaaggtgaagtatgcttctctttccttcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaatt 271  Q
    ||||||||| | |||| |||||| ||||||||||||||| || |||||||||||||||||| |||| |  |||||||||||    
T  13137120 gaaggtgaaatttgctactcttttcttcaattatcatggttggtggcttagtccgtttaccttactaggcataggctaatt 13137200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 243
Target Start/End: Complemental strand, 30972544 - 30972395
Alignment:
Q  98 aaatttggaatgagagaaataacatgttatttaatggcaaataatgcttagttatgcagattgttgacaaaattaagtctcaaactttcatg----cgaa 193  Q
    |||||||||| || |||||||||||| | |||||||||||| | |||| | |||||||| | ||||| ||||||||||| |  |||||||||     |||    
T  30972544 aaatttggaaagaaagaaataacatgctctttaatggcaaagagtgctcaattatgcaggtggttgataaaattaagtcgctgactttcatgtggctgaa 30972445  T
Q  194 ggtgaagtatgcttctctttccttcaattatcatgggtgctggcttagtc 243  Q
    || ||| | | |||||||| ||||||| |||||||| || ||||||||||    
T  30972444 ggcgaaatttccttctcttcccttcaactatcatggctggtggcttagtc 30972395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 5727189 - 5727252
Alignment:
Q  217 tcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaatttttattttct 281  Q
    ||||||||||||| || |||||||||| |||||||||||||| |||| ||||||| |||||||||    
T  5727189 tcaattatcatggttgatggcttagtctgtttaccatactgggtata-gctaattgttattttct 5727252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 13608989 - 13608922
Alignment:
Q  209 tctttccttcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaatttttat 276  Q
    |||| |||||||||| ||||| || ||||||||||||||||||||||| || ||||| ||||| ||||    
T  13608989 tcttcccttcaattaccatggttggtggcttagtccgtttaccatacttgacataggttaattgttat 13608922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 5761052 - 5761115
Alignment:
Q  217 tcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaatttttattttct 281  Q
    ||||||||||||| || ||||| |||| |||||||||||||| |||| ||||||| |||||||||    
T  5761052 tcaattatcatggttgatggctgagtctgtttaccatactgggtata-gctaattgttattttct 5761115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 10552678 - 10552734
Alignment:
Q  191 gaaggtgaagtatgcttctctttccttcaattatcatgggtgctggcttagtccgtt 247  Q
    |||||||||||||||| ||||| |||| || |||||||| || ||||||||||||||    
T  10552678 gaaggtgaagtatgctactcttccctttaactatcatggttggtggcttagtccgtt 10552734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 13157340 - 13157452
Alignment:
Q  64 atattacaggtcatttgatttgcaacattttgggaaatttggaatgagagaaataacatgttatttaatggcaaataatgcttagttatgcagattgttg 163  Q
    ||||||||||||||||| ||||||||| | |||||||| ||||| || ||||| |||| | | |||||||  ||| || ||| | |||||||| | || |    
T  13157340 atattacaggtcatttggtttgcaacagtgtgggaaatatggaaagaaagaaacaacaagatttttaatgcaaaagaaagctcaattatgcaggtggtgg 13157439  T
Q  164 acaaaattaagtc 176  Q
    ||||||| |||||    
T  13157440 acaaaatgaagtc 13157452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 22495554 - 22495500
Alignment:
Q  67 ttacaggtcatttgatttgcaacattttgggaaatttggaatgagagaaataaca 121  Q
    |||||||  ||||||||||||||| | |||||||||| ||| |||||||||||||    
T  22495554 ttacaggctatttgatttgcaacagtgtgggaaatttagaaagagagaaataaca 22495500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 22653350 - 22653404
Alignment:
Q  214 ccttcaattatcatgggtgctggcttagtccgtttaccatactggatataggcta 268  Q
    |||||||||||||||| || |||||||||| ||||||||| |||  |||||||||    
T  22653350 ccttcaattatcatggttggtggcttagtctgtttaccatgctgagtataggcta 22653404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 52578024 - 52578086
Alignment:
Q  191 gaaggtgaagtatgcttctctttccttcaattatcatgggtgctggcttagtccgtttaccat 253  Q
    ||||||||||| ||  |||||| |||||||||||||||| || ||||||||| ||||| ||||    
T  52578024 gaaggtgaagtttgtatctcttcccttcaattatcatggttggtggcttagtgcgtttgccat 52578086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 12115053 - 12115114
Alignment:
Q  209 tctttccttcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaat 270  Q
    |||| |||||||||||||||| |  ||||| |||||||||||||| || | |||||||||||    
T  12115053 tcttcccttcaattatcatggtttgtggctcagtccgtttaccatcctcggtataggctaat 12115114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 13609125 - 13609080
Alignment:
Q  76 atttgatttgcaacattttgggaaatttggaatgagagaaataaca 121  Q
    ||||| ||||||||| | |||||||||||||| |||||||||||||    
T  13609125 atttggtttgcaacagtgtgggaaatttggaaagagagaaataaca 13609080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 56 - 280
Target Start/End: Complemental strand, 45131324 - 45131096
Alignment:
Q  56 ggtgctcaatattacaggtcatttgatttgcaacattttgggaaatttggaatgagagaaataacatgttatttaatggcaaataatgcttagttatgca 155  Q
    ||||||| || |||||||||||    ||| ||||| ||||| |||| ||||| || |||||||||||||||||||| |  |||   |||| |||| ||||    
T  45131324 ggtgctctattttacaggtcataatgtttacaacagtttggaaaatatggaaggaaagaaataacatgttatttaacgataaagtgtgctcagttgtgca 45131225  T
Q  156 gattgttgacaaaattaagtctcaaactttcatg----cgaaggtgaagtatgcttctctttccttcaattatcatgggtgctggcttagtccgtttacc 251  Q
    |||||| ||||| |||| ||| ||||||||||||     ||||| ||| |||||||||||| ||||||||||||||||||| ||||||||||| ||||||    
T  45131224 gattgtcgacaagattatgtcgcaaactttcatgtggttgaaggggaaatatgcttctcttcccttcaattatcatgggtggtggcttagtccatttacc 45131125  T
Q  252 atactggatataggctaatttttattttc 280  Q
    || ||||  || ||||||||  |||||||    
T  45131124 atgctgggcattggctaattgctattttc 45131096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 205 - 270
Target Start/End: Original strand, 27009252 - 27009317
Alignment:
Q  205 cttctctttccttcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaat 270  Q
    |||||||| |||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||    
T  27009252 cttctcttcccttcaattaccatggttggtggcttagtccgtttaccatactggacataggctaat 27009317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 269
Target Start/End: Complemental strand, 40638857 - 40638784
Alignment:
Q  196 tgaagtatgcttctctttccttcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaa 269  Q
    ||||||||||||||||| |||||||||| |||||||| ||||||||||||||||| ||  |||| |||||||||    
T  40638857 tgaagtatgcttctcttcccttcaattaccatgggtggtggcttagtccgtttacgattttggacataggctaa 40638784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 189
Target Start/End: Complemental strand, 2167685 - 2167557
Alignment:
Q  61 tcaatattacaggtcatttgatttgcaacattttgggaaatttggaatgagagaaataacatgttatttaatggcaaataatgcttagttatgcagattg 160  Q
    ||||| ||||||||||| || |||||  |  |||||||||| ||||| || || ||||||| |||||||||||||||| | |||| | |||||||| |||    
T  2167685 tcaatgttacaggtcatctggtttgctgctgtttgggaaatatggaaagaaaggaataacaggttatttaatggcaaagattgctcaattatgcaggttg 2167586  T
Q  161 ttgacaaaattaagtctcaaactttcatg 189  Q
    | || || ||||||||||| |||||||||    
T  2167585 tcgagaagattaagtctcacactttcatg 2167557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 8090523 - 8090570
Alignment:
Q  206 ttctctttccttcaattatcatgggtgctggcttagtccgtttaccat 253  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  8090523 ttctcttcccttcaattatcatgggtggtggcttagtccgtttaccat 8090570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 20948148 - 20948210
Alignment:
Q  191 gaaggtgaagtatgcttctctttccttcaattatcatgggtgctggcttagtccgtttaccat 253  Q
    ||||| ||||||| ||||||||  | ||||||| |||||||| ||||||||||||||||||||    
T  20948148 gaaggcgaagtattcttctcttcgcctcaattaccatgggtggtggcttagtccgtttaccat 20948210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 273
Target Start/End: Complemental strand, 21578726 - 21578644
Alignment:
Q  191 gaaggtgaagtatgcttctctttccttcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaatttt 273  Q
    |||||||| | | ||||||||||||||||| |||||||| || ||||| | |||||||||||| || | |||||| |||||||    
T  21578726 gaaggtgaggaacgcttctctttccttcaactatcatggatggtggctcaatccgtttaccattcttggtataggttaatttt 21578644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 12606776 - 12606827
Alignment:
Q  70 caggtcatttgatttgcaacattttgggaaatttggaatgagagaaataaca 121  Q
    ||||| ||||||||||||||| |||||||||||||||| || ||||| ||||    
T  12606776 caggttatttgatttgcaacagtttgggaaatttggaaagaaagaaacaaca 12606827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 30505615 - 30505681
Alignment:
Q  55 cggtgctcaatattacaggtcatttgatttgcaacattttgggaaatttggaatgagagaaataaca 121  Q
    ||||| |||||||||||||| ||||| ||||| ||  |||| ||||||||||| || ||||||||||    
T  30505615 cggtgttcaatattacaggttatttggtttgctactgtttgagaaatttggaaagaaagaaataaca 30505681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 38409050 - 38409107
Alignment:
Q  214 ccttcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaatt 271  Q
    |||||||||||||||| || ||| | |||||||||||||| || | ||||||||||||    
T  38409050 ccttcaattatcatggttggtggttcagtccgtttaccattctaggtataggctaatt 38409107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 271
Target Start/End: Complemental strand, 841607 - 841527
Alignment:
Q  191 gaaggtgaagtatgcttctctttccttcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaatt 271  Q
    |||||||||||||||| ||||| |||| || |||||||| || |||||||||| ||| ||  |||| |  |||||||||||    
T  841607 gaaggtgaagtatgctactcttccctttaactatcatggttggtggcttagtctgttcactttactaggcataggctaatt 841527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 24739857 - 24739913
Alignment:
Q  191 gaaggtgaagtatgcttctctttccttcaattatcatgggtgctggcttagtccgtt 247  Q
    |||||||||||||||| | ||| |||| || |||||||| || ||||||||||||||    
T  24739857 gaaggtgaagtatgctacccttccctttaactatcatggttggtggcttagtccgtt 24739913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 36176698 - 36176622
Alignment:
Q  194 ggtgaagtatgcttctctttccttcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaat 270  Q
    |||||| | ||||||||||  ||||||||||||||| || ||  ||||||| ||||||||  ||| |||||||||||    
T  36176698 ggtgaaatttgcttctcttctcttcaattatcatggttggtgttttagtccatttaccatgttgggtataggctaat 36176622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 96 - 253
Target Start/End: Complemental strand, 40708601 - 40708441
Alignment:
Q  96 ggaaatttggaatgagagaaataacatgttatttaatggcaaataatgcttagttatgcagattgttgacaaaattaagtctcaaactttcatgcga--- 192  Q
    ||||||||| || || |||||||||| |||||||||||| ||| |||||    || ||||| | || ||||||||||||||||  ||||||||| |        
T  40708601 ggaaatttgaaaagaaagaaataacaagttatttaatggtaaagaatgccagattgtgcaggtggtagacaaaattaagtctctgactttcatgtggttg 40708502  T
Q  193 aggtgaagtatgcttctctttccttcaattatcatgggtgctggcttagtccgtttaccat 253  Q
    ||||||| |||| ||||||| |||||||||||||||   | ||||||||||||||||||||    
T  40708501 aggtgaaatatgtttctcttcccttcaattatcatgttcggtggcttagtccgtttaccat 40708441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 274
Target Start/End: Original strand, 23997167 - 23997235
Alignment:
Q  206 ttctctttccttcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaattttt 274  Q
    |||||||||||| ||||||||||| || ||||||||||| |||||||| || |||||||||||||||||    
T  23997167 ttctctttcctttaattatcatggctgatggcttagtccttttaccatccttgatataggctaattttt 23997235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 26260791 - 26260853
Alignment:
Q  191 gaaggtgaagtatgcttctctttccttcaattatcatgggtgctggcttagtccgtttaccat 253  Q
    ||||| ||||| |||||||||| ||||||||||||||||||| ||||||||||| ||||||||    
T  26260791 gaaggcgaagtttgcttctcttcccttcaattatcatgggtggtggcttagtccatttaccat 26260853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 52626561 - 52626634
Alignment:
Q  206 ttctctttccttcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaatttttatttt 279  Q
    ||||||| |||||||||||||||| || ||||||||||| ||||||||| ||  |||||||||||| |||||||    
T  52626561 ttctcttcccttcaattatcatggttggtggcttagtccatttaccatattgcgtataggctaattgttatttt 52626634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 191 - 269
Target Start/End: Original strand, 15259440 - 15259518
Alignment:
Q  191 gaaggtgaagtatgcttctctttccttcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaa 269  Q
    ||||| |||||||  ||||||| || ||||||| |||||||| | |||||||||||||||||||||||  |||||||||    
T  15259440 gaaggcgaagtatatttctcttcccctcaattaccatgggtggtagcttagtccgtttaccatactgggcataggctaa 15259518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 32160124 - 32160171
Alignment:
Q  206 ttctctttccttcaattatcatgggtgctggcttagtccgtttaccat 253  Q
    |||||||||||||||||| ||| |||| ||||||||||||||||||||    
T  32160124 ttctctttccttcaattaccattggtggtggcttagtccgtttaccat 32160171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 27363814 - 27363752
Alignment:
Q  191 gaaggtgaagtatgcttctctttccttcaattatcatgggtgctggcttagtccgtttaccat 253  Q
    ||||| ||||||  ||||||||||| ||||||| |||||||  ||||||||||||||||||||    
T  27363814 gaaggcgaagtactcttctctttccctcaattaccatgggttgtggcttagtccgtttaccat 27363752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 36098804 - 36098741
Alignment:
Q  70 caggtcatttgatttgcaacattttgggaaatttggaatgagagaaataacatgttatttaatg 133  Q
    ||||||||||| ||||| ||  |||||||| ||||||| || |||||||||||||| |||||||    
T  36098804 caggtcatttggtttgctacggtttgggaattttggaaagaaagaaataacatgttgtttaatg 36098741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 44675147 - 44675193
Alignment:
Q  203 tgcttctctttccttcaattatcatgggtgctggcttagtccgttta 249  Q
    |||||| ||| |||||||||||||||| || ||||||||||||||||    
T  44675147 tgcttcccttcccttcaattatcatggttggtggcttagtccgttta 44675193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 250
Target Start/End: Original strand, 48973708 - 48973750
Alignment:
Q  208 ctctttccttcaattatcatgggtgctggcttagtccgtttac 250  Q
    ||||| |||| |||||||||||||| |||||||||||||||||    
T  48973708 ctcttccctttaattatcatgggtggtggcttagtccgtttac 48973750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 31069584 - 31069624
Alignment:
Q  94 tgggaaatttggaatgagagaaataacatgttatttaatgg 134  Q
    |||||||||||||| || ||| |||||||||||||||||||    
T  31069584 tgggaaatttggaaagaaagatataacatgttatttaatgg 31069624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 33282881 - 33282945
Alignment:
Q  217 tcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaatttttattttct 281  Q
    ||||||||||||| || |||||||||||||||||||||||| ||||||| ||||| |||||||||    
T  33282881 tcaattatcatggttggtggcttagtccgtttaccatactgaatataggttaattgttattttct 33282945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 278
Target Start/End: Complemental strand, 8462560 - 8462485
Alignment:
Q  203 tgcttctctttccttcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaatttttattt 278  Q
    |||||||||| |||||||||||||||| || |||||||||| |||||||||  || | ||||||||||| ||||||    
T  8462560 tgcttctcttcccttcaattatcatggttggtggcttagtctgtttaccatgatgaacataggctaattgttattt 8462485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 176
Target Start/End: Complemental strand, 39435610 - 39435531
Alignment:
Q  97 gaaatttggaatgagagaaataacatgttatttaatggcaaataatgcttagttatgcagattgttgacaaaattaagtc 176  Q
    ||||||||||| || ||||||||||||||||| |||| |||| ||||||  ||| ||||| | ||||| || ||||||||    
T  39435610 gaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtc 39435531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 38685799 - 38685856
Alignment:
Q  190 cgaaggtgaagtatgcttctctttccttcaattatcatgggtgctggcttagtccgtt 247  Q
    ||||||||||||||||| ||||| |||| || |||||||| || ||| ||||||||||    
T  38685799 cgaaggtgaagtatgctactcttccctttaactatcatggttggtggattagtccgtt 38685856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 43776134 - 43776182
Alignment:
Q  71 aggtcatttgatttgcaacattttgggaaatttggaatgagagaaataa 119  Q
    |||||||||| ||||||||| | |||||||||||||| || ||||||||    
T  43776134 aggtcatttggtttgcaacagtgtgggaaatttggaaagaaagaaataa 43776182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 16610614 - 16610670
Alignment:
Q  197 gaagtatgcttctctttccttcaattatcatgggtgctggcttagtccgtttaccat 253  Q
    ||||| || ||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  16610614 gaagtttgtttctcttcccttcaattatcatgggtggtggcttagtccgtttaccat 16610670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 270
Target Start/End: Complemental strand, 26778763 - 26778699
Alignment:
Q  206 ttctctttccttcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaat 270  Q
    |||||||||||||||||||||||| || ||| |||||||||||||||| || || ||||||||||    
T  26778763 ttctctttccttcaattatcatggttggtggtttagtccgtttaccatgctcgacataggctaat 26778699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 269
Target Start/End: Complemental strand, 31706483 - 31706406
Alignment:
Q  192 aaggtgaagtatgcttctctttccttcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaa 269  Q
    |||| |||||||  ||||||| || ||||||| |||||||| ||||||||||||||||||||| |||  |||||||||    
T  31706483 aaggcgaagtatatttctcttcccctcaattaccatgggtggtggcttagtccgtttaccatattgggcataggctaa 31706406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 258
Target Start/End: Complemental strand, 704567 - 704507
Alignment:
Q  198 aagtatgcttctctttccttcaattatcatgggtgctggcttagtccgtttaccatactgg 258  Q
    |||| ||||| |||| | ||||||||||||||||| || ||||||||||||||||||||||    
T  704567 aagtttgcttttcttccattcaattatcatgggtggtgacttagtccgtttaccatactgg 704507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 32252184 - 32252238
Alignment:
Q  216 ttcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaat 270  Q
    |||||||||||||| || |||||||||||||||||||| || | |||||||||||    
T  32252184 ttcaattatcatggttggtggcttagtccgtttaccattctcggtataggctaat 32252238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 253
Target Start/End: Complemental strand, 29651832 - 29651796
Alignment:
Q  217 tcaattatcatgggtgctggcttagtccgtttaccat 253  Q
    |||||||||||||||| ||||||||||||||||||||    
T  29651832 tcaattatcatgggtggtggcttagtccgtttaccat 29651796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 176
Target Start/End: Complemental strand, 19315196 - 19315081
Alignment:
Q  61 tcaatattacaggtcatttgatttgcaacattttgggaaatttggaatgagagaaataacatgttatttaatggcaaataatgcttagttatgcagattg 160  Q
    ||||||| |||| | ||||| ||||| ||  |||||||||||||||| || |||||||||| |||||| || |||||| |||| |  || |||||| | |    
T  19315196 tcaatatgacagattatttggtttgctaccgtttgggaaatttggaaagaaagaaataacaggttattcaaaggcaaagaatggtcggtaatgcaggtgg 19315097  T
Q  161 ttgacaaaattaagtc 176  Q
    |||| || ||||||||    
T  19315096 ttgataagattaagtc 19315081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 29994658 - 29994717
Alignment:
Q  191 gaaggtgaagtatgcttctctttccttcaattatcatgggtgctggcttagtccgtttac 250  Q
    ||||||||||| | ||| |||| |||||||||||||||| || ||||||| |||||||||    
T  29994658 gaaggtgaagtttccttttcttcccttcaattatcatggttggtggcttaatccgtttac 29994717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 250
Target Start/End: Original strand, 21042006 - 21042048
Alignment:
Q  208 ctctttccttcaattatcatgggtgctggcttagtccgtttac 250  Q
    ||||| |||| |||||||||||||| |||||||||||||||||    
T  21042006 ctcttccctttaattatcatgggtggtggcttagtccgtttac 21042048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 270
Target Start/End: Complemental strand, 17116462 - 17116383
Alignment:
Q  191 gaaggtgaagtatgcttctctttccttcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaat 270  Q
    ||||| ||| |||||||||||| |||||| ||||||||| || |||||||||| |||||||||| ||| |||| ||||||    
T  17116462 gaaggcgaaatatgcttctcttcccttcagttatcatggttggtggcttagtctgtttaccatattgggtataagctaat 17116383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 47543481 - 47543528
Alignment:
Q  206 ttctctttccttcaattatcatgggtgctggcttagtccgtttaccat 253  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  47543481 ttctcttcccttcaattatcatgggtgatggcttagtccgtttaccat 47543528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 9628257 - 9628324
Alignment:
Q  209 tctttccttcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaatttttat 276  Q
    |||| |||||||||| ||||| || ||||||||||||||||||||||| || ||||| ||||| ||||    
T  9628257 tcttcccttcaattaccatggttggtggcttagtccgtttaccatacttgacataggttaattgttat 9628324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 9628121 - 9628166
Alignment:
Q  76 atttgatttgcaacattttgggaaatttggaatgagagaaataaca 121  Q
    ||||| ||||||||| | |||||||||||||| |||||||||||||    
T  9628121 atttggtttgcaacagtgtgggaaatttggaaagagagaaataaca 9628166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 271
Target Start/End: Complemental strand, 40616793 - 40616713
Alignment:
Q  191 gaaggtgaagtatgcttctctttccttcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaatt 271  Q
    |||||||||||||||| ||||| |||| || |||| ||| || |||||||||||||| ||  |||| |  |||||||||||    
T  40616793 gaaggtgaagtatgctactcttccctttaactatcttggttggtggcttagtccgttcactttactaggcataggctaatt 40616713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 11324519 - 11324569
Alignment:
Q  203 tgcttctctttccttcaattatcatgggtgctggcttagtccgtttaccat 253  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  11324519 tgcttctcttcccttcaattatcatgggtggtggcttagtccgtttgccat 11324569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 61 - 258
Target Start/End: Complemental strand, 17292958 - 17292758
Alignment:
Q  61 tcaatattacaggtcatttgatttgcaacattttgggaaatttggaatgagagaaataacatgttatttaatggcaaataatgcttagttatgcagattg 160  Q
    ||||| || ||||| ||||| ||||||||  | |||||||||||||| || ||||||||||||| ||||||||||||| |||| |   |||||||| | |    
T  17292958 tcaatctttcaggttatttggtttgcaaccgtatgggaaatttggaaagaaagaaataacatgt-atttaatggcaaagaatgatcgattatgcaggtgg 17292860  T
Q  161 ttgacaaaattaagtctcaaactttcatgcg----aaggtgaagtatgcttctctttccttcaattatcatgggtgctggcttagtccgtttaccatact 256  Q
    |    || |||||||||| | | |||||| |    || |  || | |||||||||| |||||||||||||||| || |||||||||||||||| ||| ||    
T  17292859 tcattaagattaagtctctagcattcatgtggttgaacgccaaatttgcttctcttcccttcaattatcatggttgatggcttagtccgtttatcatgct 17292760  T
Q  257 gg 258  Q
    ||    
T  17292759 gg 17292758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 253
Target Start/End: Complemental strand, 32196861 - 32196814
Alignment:
Q  206 ttctctttccttcaattatcatgggtgctggcttagtccgtttaccat 253  Q
    ||||||| |||||||||| |||||||| ||||||||||||||||||||    
T  32196861 ttctcttcccttcaattaacatgggtgatggcttagtccgtttaccat 32196814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 137
Target Start/End: Original strand, 9907070 - 9907140
Alignment:
Q  67 ttacaggtcatttgatttgcaacattttgggaaatttggaatgagagaaataacatgttatttaatggcaa 137  Q
    ||||||||  |||| |||||||| |  |||||||||||||| || |||||||||| |||||||||||||||    
T  9907070 ttacaggttctttggtttgcaacttcgtgggaaatttggaaagaaagaaataacaggttatttaatggcaa 9907140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 270
Target Start/End: Original strand, 34714969 - 34715034
Alignment:
Q  205 cttctctttccttcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaat 270  Q
    |||||||| || ||||||| ||||| || |||||||||| ||||||||||||||| |||| |||||    
T  34714969 cttctcttcccatcaattaccatggttggtggcttagtctgtttaccatactggacatagactaat 34715034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 5667558 - 5667498
Alignment:
Q  61 tcaatattacaggtcatttgatttgcaacattttgggaaatttggaatgagagaaataaca 121  Q
    ||||| |||||||| ||||| ||||||||| |||||||||||||||| || || |||||||    
T  5667558 tcaattttacaggttatttggtttgcaacagtttgggaaatttggaaggaaaggaataaca 5667498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 5667407 - 5667365
Alignment:
Q  208 ctctttccttcaattatcatgggtgctggcttagtccgtttac 250  Q
    |||||||||||||||||||||| || ||| |||||||||||||    
T  5667407 ctctttccttcaattatcatggttggtggattagtccgtttac 5667365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 16853073 - 16853126
Alignment:
Q  217 tcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaat 270  Q
    |||||||  ||||||| ||||||||||||||||||||  |||| ||||||||||    
T  16853073 tcaattactatgggtggtggcttagtccgtttaccattttggacataggctaat 16853126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 274
Target Start/End: Original strand, 2198 - 2281
Alignment:
Q  191 gaaggtgaagtatgcttctctttccttcaattatcatgggtgctggcttagtccgtttaccatactggatataggctaattttt 274  Q
    ||||||||||   ||||||||  |||||||||||||||| || ||||| ||||| |||||||| || | |||||||||||||||    
T  2198 gaaggtgaagctcgcttctctccccttcaattatcatggttggtggctcagtccatttaccatcctcggtataggctaattttt 2281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 64332 - 64284
Alignment:
Q  205 cttctctttccttcaattatcatgggtgctggcttagtccgtttaccat 253  Q
    ||||||||||||||||||||||||  || ||||||||||| || |||||    
T  64332 cttctctttccttcaattatcatgcttggtggcttagtcctttcaccat 64284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 64444 - 64404
Alignment:
Q  97 gaaatttggaatgagagaaataacatgttatttaatggcaa 137  Q
    ||||||||||| || |||||||||| |||||||||||||||    
T  64444 gaaatttggaaagaaagaaataacaggttatttaatggcaa 64404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University