View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15024_low_32 (Length: 330)
Name: NF15024_low_32
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_low_32 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 315
Target Start/End: Complemental strand, 8739005 - 8738707
Alignment:
| Q |
17 |
caaaggtgacagcatcatgatactcatgtataacccaattggtcctaacagggcatttatttccggtagctttcaaatagaaaacaagaatcttcttagt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8739005 |
caaaggtgacagcatcatgatactcatgtataacccagttggtcctaacatggcatttatttccggtagctttcaaatagaaaacaagaatcttcttagt |
8738906 |
T |
|
| Q |
117 |
tgctataactttgtcggtaccatgaattttaatatcatgttcaattccagtagctttccaaaaccctaactccgttgctcggttaaactttttactcttt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8738905 |
tgctataactttgtcggtaccatgaattttaatatcatgttcaattccagtagctttccaaaaccctaactccgttgctcggttaaactttttactcttt |
8738806 |
T |
|
| Q |
217 |
gcgtacttataatcacaaggacacaagaaaaaccattccgggtcatatgattttattatcgaacgagctgacaaagaaggattatatcaaaaagaaaat |
315 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8738805 |
gcgtacttgtaatcacaaggacacaagaaaaaccattccgggtcatgtgattttattatcgaacgagctgacaaagaaggattatatcaaaaagaaaat |
8738707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 271
Target Start/End: Original strand, 14372433 - 14372505
Alignment:
| Q |
199 |
ttaaactttttactctttgcgtacttataatcacaaggacacaagaaaaaccattccgggtcatatgatttta |
271 |
Q |
| |
|
|||||| ||||||||||||| ||||| |||||| ||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
14372433 |
ttaaaccttttactctttgcatacttgtaatcaataggacacaagaaaaaccattctgggtcatctgatttta |
14372505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 271
Target Start/End: Complemental strand, 8705294 - 8705222
Alignment:
| Q |
199 |
ttaaactttttactctttgcgtacttataatcacaaggacacaagaaaaaccattccgggtcatatgatttta |
271 |
Q |
| |
|
|||||| |||||||||| || |||||||||||| ||||||||| ||||||||||| ||||||| |||||||| |
|
|
| T |
8705294 |
ttaaaccttttactcttggcatacttataatcaataggacacaaaaaaaaccattctgggtcatctgatttta |
8705222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 293
Target Start/End: Complemental strand, 8740370 - 8740276
Alignment:
| Q |
199 |
ttaaactttttactctttgcgtacttataatcacaaggacacaagaaaaaccattccgggtcatatgattttattatcgaacgagctgacaaaga |
293 |
Q |
| |
|
|||||| ||||||||||||| ||||| || ||| ||||||||||||||||||||| |||||| |||||||| | ||||||||||| ||||| |
|
|
| T |
8740370 |
ttaaaccttttactctttgcatacttgtattcaataggacacaagaaaaaccattcttggtcatcagattttatcactgaacgagctgaaaaaga |
8740276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 199 - 287
Target Start/End: Complemental strand, 8723729 - 8723641
Alignment:
| Q |
199 |
ttaaactttttactctttgcgtacttataatcacaaggacacaagaaaaaccattccgggtcatatgattttattatcgaacgagctga |
287 |
Q |
| |
|
|||||| ||||||||||||| ||||| || ||| ||| ||||||||||||||||| |||||| |||||||| | |||||||||||| |
|
|
| T |
8723729 |
ttaaaccttttactctttgcatacttgtattcaatagggcacaagaaaaaccattcttggtcatcagattttatcaccgaacgagctga |
8723641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 308
Target Start/End: Complemental strand, 8722409 - 8722262
Alignment:
| Q |
161 |
ttccagtagctttccaaaaccctaactccgttgctcggttaaactttttactctttgcgtacttataatcacaaggacacaagaaaaaccattccgggtc |
260 |
Q |
| |
|
||||||||||||||||||| || ||||| ||| ||| |||||||| |||| | || ||||| |||| | ||||||||||||||||||||||| ||| |
|
|
| T |
8722409 |
ttccagtagctttccaaaatccaaactctgttcctctcttaaacttattacacctttgatacttgtaattgcgaggacacaagaaaaaccattccgagtc |
8722310 |
T |
|
| Q |
261 |
atatgattttattatcgaacgagctgacaaagaaggattatatcaaaa |
308 |
Q |
| |
|
|| ||| |||| | ||| ||||||| | |||| || |||||||||| |
|
|
| T |
8722309 |
atcggatcttatcactgaatgagctgaaacagaacgaatatatcaaaa |
8722262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 293
Target Start/End: Complemental strand, 8691015 - 8690920
Alignment:
| Q |
198 |
gttaaactttttactctttgcgtacttataatcacaaggacacaagaaaaaccattccgggtcatatgattttattatcgaacgagctgacaaaga |
293 |
Q |
| |
|
||||||| ||||||| |||||||| || ||||| | |||||| |||||||||||||| || |||| |||||||| | |||| |||||| ||||| |
|
|
| T |
8691015 |
gttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaaga |
8690920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University