View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15024_low_34 (Length: 324)
Name: NF15024_low_34
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 5412393 - 5412693
Alignment:
| Q |
16 |
gttatcagacgcagaacttagctggatacgcgaccttgtttcatgttaataatgaaattattatttagttaatagttaaacatatttttgtatgtgttgt |
115 |
Q |
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| T |
5412393 |
gttatcagacgaagaacttagctggatacgcgaccttgtttcatgttaataatgaaattattatttagttaatagttaaacatatttttgtatgtgttgt |
5412492 |
T |
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| Q |
116 |
ctaatgatacatatatgtcgatgtttatgcatgtttggatatttcagcactttcagaaagctaggggtagggaattttggggtggatacaaagacgatca |
215 |
Q |
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| T |
5412493 |
ctaatgatacatatatgtcgatgtttatgcatgtttggatatttcagcactttcaggaagttaggggtagggaattttggggtggatacaaagacgatca |
5412592 |
T |
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| Q |
216 |
ccatccacgtgccacaatgtttgctcctacgaaggaaatgatcgtaacagatacaacatgatcaaacctgaatcggatcatagttagaggcgttttcttc |
315 |
Q |
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| T |
5412593 |
ccatccacgtgccacaatgtttgctcctacgaaggaaatgatcgtaacagatacaacatgatcaaacctgaatcggatcatagttagaggcgttttcttc |
5412692 |
T |
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| Q |
316 |
t |
316 |
Q |
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| T |
5412693 |
t |
5412693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 19121860 - 19121963
Alignment:
| Q |
38 |
tggatacgcgaccttgtttcatgt-taataatgaaattattatttagttaatagttaaacatatttttgtatgtgttgtctaatgatacatatatgtcga |
136 |
Q |
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|||||||||| || ||||| | || ||||||||||||||| ||||||||||| ||||||||| ||| ||||||||||||| |||| ||||||| || |
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| T |
19121860 |
tggatacgcggccatgttttaggtataataatgaaattatcatttagttaatggttaaacatgcatttttatgtgttgtctattgattggtatatgttga |
19121959 |
T |
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| Q |
137 |
tgtt |
140 |
Q |
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|||| |
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| T |
19121960 |
tgtt |
19121963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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