View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15024_low_36 (Length: 313)
Name: NF15024_low_36
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 33512288 - 33512578
Alignment:
| Q |
16 |
caaataatcaattagcaacgcttatgagatcaagatcaagattttcaggaattgacaaaacagctattgaatcacttccttttttcaaattctcttctct |
115 |
Q |
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| T |
33512288 |
caaataatcaattagcaacacttatgagatcaagatcaagattttcaggaattgacaaaacagctattgaatcacttccttttttcaaattctcttctct |
33512387 |
T |
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| Q |
116 |
caaaggttcaaaacaagggttggaatgttcaatatgtttgtcgaaattcgaagacatagaaattttaagattgttaccaaaatgtaaacatgcttttcat |
215 |
Q |
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| T |
33512388 |
caaaggttcaaaacaagggttggaatgttcaatatgtttgtcgaaattcgaagacatagaaattttaagattgttaccaaaatgtaaacatgcttttcat |
33512487 |
T |
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| Q |
216 |
attgattgtattgatcattggcttgagaaacactcaagttgtcctatttgcagacataaagtcaacattgaagatcaaacaacctttgctt |
306 |
Q |
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| T |
33512488 |
attgattgtattgatcattggcttgagaaacactcaagttgtcctatttgcagacataaagtcaacattgaagatcaaacaacctttgctt |
33512578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 268
Target Start/End: Complemental strand, 51190733 - 51190546
Alignment:
| Q |
81 |
attgaatcacttccttttttcaaattctcttctctcaaaggttcaaaacaagggttggaatgttcaatatgtttgtcgaaattcgaagacatagaaattt |
180 |
Q |
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|||||| |||||||||| ||||||||||||||| | ||||| || |||||||| || |||||| | | ||||| |||||||| |||||| || ||| |
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| T |
51190733 |
attgaaacacttcctttcttcaaattctcttctttaaaaggatccaaacaaggcttagaatgtaccgtttgtttatcgaaatttgaagacgaggagattc |
51190634 |
T |
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| Q |
181 |
taagattgttaccaaaatgtaaacatgcttttcatattgattgtattgatcattggcttgagaaacactcaagttgtcctatttgcag |
268 |
Q |
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| T |
51190633 |
tgagattgttgccgaaatgcaagcatgcttttcatatgaattgtattgacaagtggcttgaaagtcactctacttgtcctctttgcag |
51190546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 15103710 - 15103672
Alignment:
| Q |
180 |
ttaagattgttaccaaaatgtaaacatgcttttcatatt |
218 |
Q |
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| T |
15103710 |
ttaagattgttaccaaattgtaaccatgcttttcatatt |
15103672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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