View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15024_low_38 (Length: 310)
Name: NF15024_low_38
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 7 - 293
Target Start/End: Original strand, 41198366 - 41198652
Alignment:
| Q |
7 |
tagattatacttgtaatagttgttatttttacctaataattagaatggttgagaaatgtaatgtatattgattggaaggtttaatattccaattccagtt |
106 |
Q |
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| T |
41198366 |
tagattctacttgtaatagttgttatttttacctaataattagaatggttgagaaatgtaatgtatattgattggaaggtttaatattccaattccagtt |
41198465 |
T |
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| Q |
107 |
ctttacaatttggtaatgctaattagaaggtttaatattgattggaaggtttaattagaaccacatcttgttctttgagaagcctattgttgtagtttga |
206 |
Q |
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| T |
41198466 |
ctttacaatttggtaatgctaattagaaggtttaatattgattggaaggtttaattagaaccacatcttgttctttgagaagcctattgttatagtttga |
41198565 |
T |
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| Q |
207 |
atttaattgaatttttcaactaagagttaatcaattttgttttgttgaagaaaacataaaaatgtcaaatattgaatagaaatttgt |
293 |
Q |
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| T |
41198566 |
atttaattgaatttttcaactaagagttaatcaattttgttttgttgaagaaaacataaaaatgtcaaatattgaatagaaatttgt |
41198652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 9e-27; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 17909622 - 17909708
Alignment:
| Q |
7 |
tagattatacttgtaatagttgttatttttacctaataattagaatggttgagaaatgtaatgtatattgattggaaggtttaatattcca |
97 |
Q |
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| T |
17909622 |
tagattctacttgtaatagttgttatttttacctaataattagaatgg----gaaatgtaatttatattgattgaaaggtttaatattcca |
17909708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 165 - 283
Target Start/End: Original strand, 17909736 - 17909857
Alignment:
| Q |
165 |
aaccacatcttgttctttgagaagcctat--tgttgtagttt-gaatttaattgaatttttcaactaagagttaatcaattttgttttgttgaagaaaac |
261 |
Q |
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| T |
17909736 |
aaccacatcttgttctttgagaagcctatattgttgtagttttgaattttattaattttttcattcaagagttaatcaatttttatttgttaaagaaaac |
17909835 |
T |
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| Q |
262 |
ataaaaatgtcaaatattgaat |
283 |
Q |
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| T |
17909836 |
ttagaaatgtcaaatattgaat |
17909857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 17910965 - 17910884
Alignment:
| Q |
22 |
atagttgttatttttacctaataattagaatggttgagaaatgtaa--tgtatattgattggaaggtttaatattccaattc |
101 |
Q |
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| T |
17910965 |
atagttgttattattacctaataattaaaatggctgagaaatgtaatgtgtacattgattggaaggcttaatattgcaattc |
17910884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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