View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15024_low_40 (Length: 304)
Name: NF15024_low_40
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 7218405 - 7218675
Alignment:
| Q |
18 |
ttctgatattgtttatttcagttaccaaatgtagtatggcttctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatac |
117 |
Q |
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| T |
7218405 |
ttctgatattgtttatttcagttaccaaatgtagcatggcttctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatcc |
7218504 |
T |
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| Q |
118 |
tcatatgccaaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaactttacacaattc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7218505 |
tcatatgccaaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaactttacacaattc |
7218604 |
T |
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| Q |
218 |
acatgattcattcatatatatgtacctcataagtgtgaacttacattattatttcttttttgtagtgatggcc |
290 |
Q |
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| T |
7218605 |
acatgattcattc--atatatgtacttaataagtgtgaacttacattattatttcttttttgtagtgatggcc |
7218675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 26 - 273
Target Start/End: Complemental strand, 7317650 - 7317403
Alignment:
| Q |
26 |
ttgtttatttcagttaccaaatgtagtatggcttctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgc |
125 |
Q |
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| T |
7317650 |
ttgtttatttcagttaccaaatgcaatacagcttctgatgccttgaattcgatggaaagaaaggactgttttgatgtaatgttgattgatgctcatatgc |
7317551 |
T |
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| Q |
126 |
caaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaactttacacaattcacatgatt |
225 |
Q |
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| T |
7317550 |
caaacatggatgtttatgactttgtccaacatgttaccctactactcaaaattcctgtcattagtaagaatttcttcaactttacacaattcacatgatt |
7317451 |
T |
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| Q |
226 |
cattcatatatatgtacctcataagtgtgaacttacattattatttct |
273 |
Q |
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| T |
7317450 |
cattcatatatatgtacttaataagtgtgaacttacattattatttct |
7317403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 29 - 212
Target Start/End: Original strand, 7243922 - 7244105
Alignment:
| Q |
29 |
tttatttcagttaccaaatgtagtatggcttctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgccaa |
128 |
Q |
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| T |
7243922 |
tttatttcagttaccaaatgtaacacagcttctgatgccttgaacttgttggaaagaaaggactgtttcgatgtaatgttgattgatcctcatatgccaa |
7244021 |
T |
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| Q |
129 |
acatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaactttacac |
212 |
Q |
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| T |
7244022 |
acatggatgcttatgactttgtccaacatgttaccctacaactcaacattcctgtcattagtaagaatttattcaactttacac |
7244105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 26 - 209
Target Start/End: Complemental strand, 7324439 - 7324256
Alignment:
| Q |
26 |
ttgtttatttcagttaccaaatgtagtatggcttctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgc |
125 |
Q |
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||||||||||||||||||||||| | | ||||||||||| || || ||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
7324439 |
ttgtttatttcagttaccaaatgcaattcagcttctgatgctttgtacttgttggaaagaaaggactgttatgatgtaatgttgattgatgctcatatgc |
7324340 |
T |
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| Q |
126 |
caaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaacttta |
209 |
Q |
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| T |
7324339 |
cgaacatggatgtctatgactttgtccaaaatgctaccctacaactcaacattcctgttattagtaagaatttcttcaacttta |
7324256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 211
Target Start/End: Original strand, 8162139 - 8162314
Alignment:
| Q |
37 |
agttaccaaatgtagtatggcttctgatgccttcaacatgttgga-aagaaaggactgtttcgatgtaatgttgattgatactcatatgccaaacatgga |
135 |
Q |
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|||||||||||||| | ||||||||||||| || | ||||||| || |||| ||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
8162139 |
agttaccaaatgtaatgtggcttctgatgcattggatttgttggacaaaaaagtgctgtttcgatgtaatgttgattgatgctcgtatgccaaacatgga |
8162238 |
T |
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| Q |
136 |
tgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaactttaca |
211 |
Q |
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| T |
8162239 |
tgcctgtgactttgtccaacatgtttccctacaacttcagattcctgctatcagtaagaatttatttaactttaca |
8162314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 7244127 - 7244204
Alignment:
| Q |
215 |
ttcacatgattcattcatatatat---gtacctcataagtgtgaacttacattattatttcttttttgtagtgatggc |
289 |
Q |
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|||| ||||||||||||||||||| || |||| ||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
7244127 |
ttcatatgattcattcatatatatattgttactcagaagtgtggactgacattattatttcttttttgtagtgatggc |
7244204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 7324222 - 7324158
Alignment:
| Q |
225 |
tcattcatatatatgtacctcataagtgtgaacttacattattatttcttttttgtagtgatggc |
289 |
Q |
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|||||||||| ||||||| | | ||| ||||||| ||||||||||||||| ||| |||||||||| |
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| T |
7324222 |
tcattcatatttatgtacttaagaagcgtgaactgacattattatttcttatttttagtgatggc |
7324158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 289
Target Start/End: Original strand, 8162379 - 8162417
Alignment:
| Q |
251 |
tgtgaacttacattattatttcttttttgtagtgatggc |
289 |
Q |
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| T |
8162379 |
tgtgaactcacattattatttgttttttgtagtgatggc |
8162417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 26 - 209
Target Start/End: Complemental strand, 22766478 - 22766295
Alignment:
| Q |
26 |
ttgtttatttcagttaccaaatgtagtatggcttctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgc |
125 |
Q |
| |
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||||||||||||||||||||||| | || |||||||| ||||| ||| |||||||||||||||||||||| ||||||||||| |||||| ||||||||| |
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| T |
22766478 |
ttgtttatttcagttaccaaatgcaatacagcttctgaagccttgaacttgttggaaagaaaggactgttttgatgtaatgttaattgatgctcatatgc |
22766379 |
T |
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| Q |
126 |
caaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaacttta |
209 |
Q |
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||||||||||||| ||||| ||||| ||| || | | |||||||| |||||||| ||||||||| |||| |||||||||| |
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| T |
22766378 |
caaacatggatgcctatgattttgttcaacatgctaccggtcaactcaatattcctgttattagtaagtatttcttcaacttta |
22766295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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