View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15024_low_41 (Length: 295)
Name: NF15024_low_41
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 37318270 - 37318542
Alignment:
| Q |
18 |
tcatgtacattacaccaaacctgaaaattgtcgaaggctcgagctggaatgttatcgtcaaattccctcatcatatcccacggtccatctccaactccaa |
117 |
Q |
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| T |
37318270 |
tcatgtacattacaccaaacctgaaaattgtcgaaggctcgagctggaatattatcgtcaaattccctcatcatatcccacggtccatctccaactccaa |
37318369 |
T |
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| Q |
118 |
ccaaaactatcgacagcggatactcactgcaatttagtgagtgtaagaatccaggatagcgtatcagaggagagaagcaactacaaaacatacctggctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37318370 |
ccaaaactatcgacagcggatactcactgcaatttagtgagtgtaagaatccaggatagcgtatcagaggagagaagcaactacaaaacatacctggctt |
37318469 |
T |
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| Q |
218 |
tcactattgcatcaattgtcttcttttcctgagaacttagcttgccattctctgtgtcaacacttcttctcac |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37318470 |
tcactattgcatcaattgtcttcttttcctgagaacttagcttgccattctctgtgtcaacacttcttgtcac |
37318542 |
T |
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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 154
Target Start/End: Original strand, 39201984 - 39202106
Alignment:
| Q |
32 |
ccaaacctgaaaattgtcgaaggctcgagctggaatgttatcgtcaaattccctcatcatatcccacggtccatctccaactccaaccaaaactatcgac |
131 |
Q |
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| T |
39201984 |
ccaaacctgaaaattgtcaaacgcccgagaagggatgttgtcatcaaattccttcatcatctcccacggcccatctccaactcctaccaaaactattgac |
39202083 |
T |
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| Q |
132 |
agcggatactcactgcaatttag |
154 |
Q |
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| T |
39202084 |
aatggatactcactgcaatttag |
39202106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 34392476 - 34392555
Alignment:
| Q |
36 |
acctgaaaattgtcgaaggctcgagctggaatgttatcgtcaaattccctcatcatatcccacggtccatctccaactcc |
115 |
Q |
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||||||||||| || || ||||| || ||||||||||||||||| | ||||||| ||||| || |||||||||||||| |
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| T |
34392476 |
acctgaaaattatcaaatgctcgtgcaggaatgttatcgtcaaactgtttcatcatgtcccatggcccatctccaactcc |
34392555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 11689033 - 11689121
Alignment:
| Q |
33 |
caaacctgaaaattgtcgaaggctcgagctggaatgttatcgtcaaattccctcatcatatcccacggtccatctccaactccaaccaa |
121 |
Q |
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|||||||| ||||| |||||||| |||| |||||| |||||||||||||| ||||||| ||||| |||||||||||||| |||||||| |
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| T |
11689033 |
caaacctggaaattatcgaaggcacgagatggaatattatcgtcaaattctttcatcatgtcccatggtccatctccaacaccaaccaa |
11689121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 7474233 - 7474148
Alignment:
| Q |
36 |
acctgaaaattgtcgaaggctcgagctggaatgttatcgtcaaattccctcatcatatcccacggtccatctccaactccaaccaa |
121 |
Q |
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||||||||||| |||||||| | ||||| || || || ||||| ||| ||||||| ||||| |||||||||||||| |||||||| |
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| T |
7474233 |
acctgaaaattatcgaaggccctggctggcatattgtcatcaaactccttcatcatgtcccaaggtccatctccaacaccaaccaa |
7474148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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