View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15024_low_42 (Length: 293)
Name: NF15024_low_42
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_low_42 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 275
Target Start/End: Complemental strand, 34759443 - 34759181
Alignment:
| Q |
13 |
aaaatactatcacaatttggaagtgcgtagccaaacacgtttagggtttgatagaacaaaacaagtacctttgtactctaatcaacatactaataggaat |
112 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34759443 |
aaaatactaccacaagttggaagtgcgtagccaaacacttttagggtttgatagaacaaaacaagcacctttgtactctaatcaacatactaataggaat |
34759344 |
T |
|
| Q |
113 |
ttggatatttgtcccatggcatccaagaccaagttgatgaggcatcattagcagaaagatacaagctctggatgacacaatatggaaaggtctgcaagga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34759343 |
ttggatatttgtcccatggcatccaagaccaagttgatgatgcatcattagcagaaagatacaagctctggatgacataatatggaaaggtctgcaagga |
34759244 |
T |
|
| Q |
213 |
tgatgtagagcacgaaaaacacttccaaatattcaaacacaatgtggcctccattgaatcctc |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34759243 |
tgatgtagagcacgaaaaacacttccaaatattcaaacacaatgtggcctccattgaatcctc |
34759181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 269
Target Start/End: Complemental strand, 29734122 - 29734033
Alignment:
| Q |
180 |
ctggatgacacaatatggaaaggtctgcaaggatgatgtagagcacgaaaaacacttccaaatattcaaacacaatgtggcctccattga |
269 |
Q |
| |
|
||||| |||| |||||||| |||| |||||||| || ||| || |||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
29734122 |
ctggaagacaaaatatggagttgtctacaaggatgttgcagaacagaaaaaacactttcaaatattcaaacacaatgtggcctacattga |
29734033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 30057175 - 30057108
Alignment:
| Q |
207 |
caaggatgatgtagagcacgaaaaacacttccaaatattcaaacacaatgtggcctccattgaatcct |
274 |
Q |
| |
|
||||||||||| |||| | ||||| ||| |||||||||||||||||||||| |||| |||||| |||| |
|
|
| T |
30057175 |
caaggatgatgcagaggaggaaaagcacatccaaatattcaaacacaatgttgcctacattgattcct |
30057108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 273
Target Start/End: Complemental strand, 29607022 - 29606976
Alignment:
| Q |
227 |
aaaaacacttccaaatattcaaacacaatgtggcctccattgaatcc |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
29607022 |
aaaaacacttccaaatattcaaacacaatgtgatctacattgaatcc |
29606976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 274
Target Start/End: Original strand, 29746146 - 29746193
Alignment:
| Q |
227 |
aaaaacacttccaaatattcaaacacaatgtggcctccattgaatcct |
274 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
29746146 |
aaaaacacttcgaaatattcaaacacaatgtgatctacattgaatcct |
29746193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 116
Target Start/End: Complemental strand, 30057306 - 30057271
Alignment:
| Q |
81 |
ctttgtactctaatcaacatactaataggaatttgg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30057306 |
ctttgtactctaatcaacatactaatagtaatttgg |
30057271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University