View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15024_low_45 (Length: 287)
Name: NF15024_low_45
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_low_45 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 8738276 - 8738453
Alignment:
| Q |
1 |
taaataggaactggggtaatagctgatttgcaacacatatatagtaagagacagttccccatgctttgtttttgttcaactttgggctccaaaagtaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8738276 |
taaataggaactggggtaatagctgatttgcaacacatatatagtaagagacagttccccatgctttgtttttgttcaactttgggctccaaaagtaaat |
8738375 |
T |
|
| Q |
101 |
tatgacgtaccaacatcaaagctctctcacttccttcttgtagcattataaattgatgcaaacctaccaacatattca |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8738376 |
tatgacgtaccaacatcaaagctctctcactaccttcttgtagcattataaattgatgcaaacctaccaacatattca |
8738453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 8738483 - 8738547
Alignment:
| Q |
202 |
ctctcattcttgattttcttcctgtcggattcagattccgaccaacaaatgaagaactagttaat |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8738483 |
ctctcattcttgattttcttcctgtcggattcagattccgaccaacaaatgaagaactagttaat |
8738547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 8690720 - 8690756
Alignment:
| Q |
220 |
ttcctgtcggattcagattccgaccaacaaatgaaga |
256 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
8690720 |
ttcctgttggattcagattccgaccaacagatgaaga |
8690756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 8704992 - 8705028
Alignment:
| Q |
220 |
ttcctgtcggattcagattccgaccaacaaatgaaga |
256 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
8704992 |
ttcctgttggattcagattccgaccaacagatgaaga |
8705028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University