View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15024_low_46 (Length: 277)

Name: NF15024_low_46
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15024_low_46
NF15024_low_46
[»] chr1 (9 HSPs)
chr1 (1-271)||(6517271-6517550)
chr1 (17-277)||(6506965-6507234)
chr1 (2-277)||(6521486-6521770)
chr1 (5-270)||(6512873-6513147)
chr1 (82-178)||(47713349-47713445)
chr1 (86-178)||(47718143-47718235)
chr1 (82-178)||(47745932-47746028)
chr1 (82-174)||(6500239-6500331)
chr1 (86-178)||(47760264-47760356)
[»] scaffold0341 (2 HSPs)
scaffold0341 (17-277)||(990-1259)
scaffold0341 (17-277)||(8643-8913)
[»] chr5 (3 HSPs)
chr5 (86-264)||(28856512-28856690)
chr5 (86-195)||(28831385-28831494)
chr5 (86-195)||(28861858-28861967)


Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 6517550 - 6517271
Alignment:
Q  1 tttccaatacttctgcgatcaagataacgattttggtaactacacaaccaacagcacctaccacacaaaccttaacaccctt---------ctcacttcc 91  Q
    ||||||||||||||| |||||| ||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||         |||||||||    
T  6517550 tttccaatacttctgtgatcaaaataacgatggtggtatctacacaaccaacagcacctaccacacaaaccttaacacccttttatccattctcacttcc 6517451  T
Q  92 aacaaagaaatcaactacggtttctataactcctcttatggcataaacagcgacaaagtaaacgcaattggactatgcagaggagatttaaaaccgaatg 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6517450 aacaaagaaatcaactacggtttctataactcctcttatggcataaacagcgacaaagtaaacgcaattggactatgcagaggagatttaaaaccgaatg 6517351  T
Q  192 attgtcgaaattgtctccaaaattcaactgtgtttctaacacaactttgtcaaaatagaaaacaagcaattggatggtac 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  6517350 attgtcgaaattgtctccaaaattcaactgtgtttctaacacaacgttgtcaaaatagaaaacaagcaattggttggtac 6517271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 6507234 - 6506965
Alignment:
Q  17 gatcaagataacgattttggtaactacacaaccaacagcacctaccacacaaaccttaacacccttct---------cacttccaacaaagaaatcaact 107  Q
    ||||||| |||||||  ||||||||||||||||||||||||||||||||||||||| || ||||||||         ||||||||||||||| || ||||    
T  6507234 gatcaaggtaacgatgatggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaact 6507135  T
Q  108 acggtttctataactcctcttatggcataaacagcgacaaagtaaacgcaattggactatgcagaggagatttaaaaccgaatgattgtcgaaattgtct 207  Q
    ||||||||||||| |||||||||||| |||||| ||||||||||||||| |||||||| || ||||||||| | |||||  ||||||||| |||||| ||    
T  6507134 acggtttctataattcctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcct 6507035  T
Q  208 ccaaaattcaactgtgtttctaacacaactttgtcaaaatagaaaacaagcaattggatggtacaacgat 277  Q
    ||||||||||||||   ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  6507034 ccaaaattcaactgcccttctaacacaactttgtcaaaatcgaaaagaagcaattggatggtacgacgat 6506965  T

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Target: chr1; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 2 - 277
Target Start/End: Original strand, 6521486 - 6521770
Alignment:
Q  2 ttccaatacttctgcgatcaagataacgattttggtaactacacaaccaacagcacctaccacacaaaccttaacaccctt---------ctcacttcca 92  Q
    |||||||||||||| |||||| |||| |||  |||||||||| |||| |||||||||||||||||||||||||||||||||         ||||||||||    
T  6521486 ttccaatacttctgtgatcaaaataatgatggtggtaactacccaacaaacagcacctaccacacaaaccttaacacccttttatccactctcacttcca 6521585  T
Q  93 acaaagaaatcaactacggtttctataactcctcttatggcataaacagcgacaaagtaaacgcaattggactatgcagaggagatttaaaaccgaatga 192  Q
    ||||||| |||||||||||||||||||| ||||||||||| |  ||||  |||||||||||||| ||||||||||| ||||||||| | ||||  |||||    
T  6521586 acaaagatatcaactacggtttctataattcctcttatggaaacaacactgacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatga 6521685  T
Q  193 ttgtcgaaattgtctccaaaattcaactgtgtttctaacacaactttgtcaaaatagaaaacaagcaattggatggtacaacgat 277  Q
    ||||| |||||| ||| |||||||||||||  |||||||||||| |||||||||  ||||| |||||||||||||||||||||||    
T  6521686 ttgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtcaaaaccgaaaagaagcaattggatggtacaacgat 6521770  T

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Target: chr1; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 5 - 270
Target Start/End: Complemental strand, 6513147 - 6512873
Alignment:
Q  5 caatacttctgcgatcaagataacgattttggtaactacacaaccaacagcacctaccacacaaaccttaacacccttct---------cacttccaaca 95  Q
    ||||||||||| |||||| ||||||||  ||||||||||||||||||||||||||| |||| ||||||||||||||||||         |||||||||||    
T  6513147 caatacttctgtgatcaaaataacgatggtggtaactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaaca 6513048  T
Q  96 aagaaatcaactacggtttctataactcctcttatggcataaacagcgacaaagtaaacgcaattggactatgcagaggagatttaaaaccgaatgattg 195  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| |||||||| || ||||||||| | ||||| ||||||||    
T  6513047 aagatatcaactacggtttctataattcctcttatggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacccaatgattg 6512948  T
Q  196 tcgaaattgtctccaaaattcaactgtgtttctaacacaactttgtcaaaatagaaaacaagcaattggatggta 270  Q
    || ||||||  |  | |||||| |||| |||||||||||||||||||||||| ||||| | || ||||| |||||    
T  6512947 tcaaaattgcataaagaattcatctgtctttctaacacaactttgtcaaaatcgaaaagaggctattggttggta 6512873  T

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Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 178
Target Start/End: Complemental strand, 47713445 - 47713349
Alignment:
Q  82 tctcacttccaacaaagaaatcaactacggtttctataactcctcttatggcataaacagcgacaaagtaaacgcaattggactatgcagaggagat 178  Q
    ||||||||||||||   ||||||||||||||||||| || | ||||||||||  ||||| ||||||||||||||| |||||||| ||||||||||||    
T  47713445 tctcacttccaacactcaaatcaactacggtttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagat 47713349  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 178
Target Start/End: Complemental strand, 47718235 - 47718143
Alignment:
Q  86 acttccaacaaagaaatcaactacggtttctataactcctcttatggcataaacagcgacaaagtaaacgcaattggactatgcagaggagat 178  Q
    |||||||||| ||||||||||||||||||||| || | ||||||||||  |||||  ||||||||||||||  |||| || ||||||||||||    
T  47718235 acttccaacacagaaatcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagat 47718143  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 178
Target Start/End: Complemental strand, 47746028 - 47745932
Alignment:
Q  82 tctcacttccaacaaagaaatcaactacggtttctataactcctcttatggcataaacagcgacaaagtaaacgcaattggactatgcagaggagat 178  Q
    ||||||||||||||   ||||||||||||||||||| || | ||||||||||  |||||  || ||||||||||| |||||||| ||||||||||||    
T  47746028 tctcacttccaacactcaaatcaactacggtttctacaatttctcttatggccaaaacactgataaagtaaacgccattggactctgcagaggagat 47745932  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 6500331 - 6500239
Alignment:
Q  82 tctcacttccaacaaagaaatcaactacggtttctataactcctcttatggcataaacagcgacaaagtaaacgcaattggactatgcagagg 174  Q
    |||||||||||||| ||||||||||||||||||||| || |  ||  |||||  |||||||||||||||  |||| || ||||||||| ||||    
T  6500331 tctcacttccaacacagaaatcaactacggtttctacaatttttcacatggcgaaaacagcgacaaagtctacgcgatcggactatgccgagg 6500239  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 178
Target Start/End: Complemental strand, 47760356 - 47760264
Alignment:
Q  86 acttccaacaaagaaatcaactacggtttctataactcctcttatggcataaacagcgacaaagtaaacgcaattggactatgcagaggagat 178  Q
    |||||||||  ||||||||||||||||||||| ||    |||||||||  |||||  |||||||||||||| |||||||| || |||||||||    
T  47760356 acttccaacgcagaaatcaactacggtttctacaatatttcttatggccaaaacactgacaaagtaaacgccattggactctgtagaggagat 47760264  T

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Target: scaffold0341 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 1259 - 990
Alignment:
Q  17 gatcaagataacgattttggtaactacacaaccaacagcacctaccacacaaaccttaacacccttct---------cacttccaacaaagaaatcaact 107  Q
    ||||||| |||||||  ||||||||||||||||||||||||||||||||||||||| || ||||||||         ||||||||||||||| || ||||    
T  1259 gatcaaggtaacgatgatggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaact 1160  T
Q  108 acggtttctataactcctcttatggcataaacagcgacaaagtaaacgcaattggactatgcagaggagatttaaaaccgaatgattgtcgaaattgtct 207  Q
    ||||||||||||| |||||||||||| |||||| ||||||||||||||| |||||||| || ||||||||| | |||||  ||||||||| |||||| ||    
T  1159 acggtttctataattcctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcct 1060  T
Q  208 ccaaaattcaactgtgtttctaacacaactttgtcaaaatagaaaacaagcaattggatggtacaacgat 277  Q
    ||||||||||||||   ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  1059 ccaaaattcaactgcccttctaacacaactttgtcaaaatcgaaaagaagcaattggatggtacgacgat 990  T

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Target: scaffold0341; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 8913 - 8643
Alignment:
Q  17 gatcaagataacgattttggtaactacacaaccaacagcacctaccacacaaaccttaacacccttct---------cacttccaacaaagaaatcaact 107  Q
    ||||||| |||||||  ||||||||||||||||||||||||||||||||||||||| || ||||||||         ||||||||||||||| || ||||    
T  8913 gatcaaggtaacgatgatggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaact 8814  T
Q  108 acggtttctataactcctcttatggcataaacagcgacaaagtaaacgcaattggactatgcagaggagatttaaaaccgaatgattgtcgaaattgtct 207  Q
    ||||||||||||| |||||||||||| |||||| ||||||||||||||| |||||||| || ||||||||| | |||||  ||||||||| |||||| ||    
T  8813 acggtttctataattcctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcct 8714  T
Q  208 ccaaaattcaactgtgtttctaacacaactttgtcaaaata-gaaaacaagcaattggatggtacaacgat 277  Q
    ||||||||||||||   |||||||||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  8713 ccaaaattcaactgcccttctaacacaactttgtcaaaatacgaaaagaagcaattggatggtacgacgat 8643  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 264
Target Start/End: Complemental strand, 28856690 - 28856512
Alignment:
Q  86 acttccaacaaagaaatcaactacggtttctataactcctcttatggcataaacagcgacaaagtaaacgcaattggactatgcagaggagatttaaaac 185  Q
    |||||||||| |||||||| |||||||||||| |||| ||| |  |||  | ||| | |||||||| |||| || ||| |||||||||||||| | || |    
T  28856690 acttccaacacagaaatcacctacggtttctacaacttctcattcggcgaagacaacaacaaagtatacgccataggattatgcagaggagatgttaatc 28856591  T
Q  186 cgaatgattgtcgaaattgtctccaaaattcaactgtgtttctaacacaactttgtcaaaatagaaaacaagcaattgg 264  Q
    | |||||||| || | ||||||  | |||||||  ||  |||||||||||  ||||| ||| | |||| ||||||||||    
T  28856590 caaatgattgccgcagttgtcttaacaattcaagagttcttctaacacaaaattgtccaaacaaaaaagaagcaattgg 28856512  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 195
Target Start/End: Complemental strand, 28831494 - 28831385
Alignment:
Q  86 acttccaacaaagaaatcaactacggtttctataactcctcttatggcataaacagcgacaaagtaaacgcaattggactatgcagaggagatttaaaac 185  Q
    |||||||||| |||||||| |||||||||||| |||| ||| || |||| |  || | |||||||| |||| || ||| |||| ||||||||| | || |    
T  28831494 acttccaacacagaaatcacctacggtttctacaacttctcatacggcaaaggcaacaacaaagtatacgccataggattatgtagaggagatgttaatc 28831395  T
Q  186 cgaatgattg 195  Q
    | ||||||||    
T  28831394 caaatgattg 28831385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 195
Target Start/End: Complemental strand, 28861967 - 28861858
Alignment:
Q  86 acttccaacaaagaaatcaactacggtttctataactcctcttatggcataaacagcgacaaagtaaacgcaattggactatgcagaggagatttaaaac 185  Q
    |||||||||| |||||||| |||||||||||| |||| ||| |  |||  | ||| | |||||||| |||| || ||| |||||||||||||| | || |    
T  28861967 acttccaacacagaaatcacctacggtttctacaacttctcattcggcgaagacaacaacaaagtatacgccataggattatgcagaggagatgttaatc 28861868  T
Q  186 cgaatgattg 195  Q
    | ||||||||    
T  28861867 caaatgattg 28861858  T

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