View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15024_low_5 (Length: 628)
Name: NF15024_low_5
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_low_5 |
 | |
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| [»] scaffold0005 (1 HSPs) |
| | |
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| [»] scaffold0158 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 552; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 7 - 614
Target Start/End: Complemental strand, 14734727 - 14734120
Alignment:
| Q |
7 |
cttccattacttaaatactcatccatcctaaccttcatgctgtatgacatttcactttccgtcctataaggttgacacttaagattcgggaggcgcgatc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14734727 |
cttccattacttaaatactcatccatcctaaccttcatgttgtatgacatttcactttccgtcctataagtttgacacttaagattcgggaggcgcgatc |
14734628 |
T |
|
| Q |
107 |
tctgacagagtctgactaacttacattgcttacttaattacctcataaagatttaacttcatctacttccaacggttttacttgtgcccctttatcatgt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
14734627 |
tctgacagagtctgactaacttacattgcttacttaattaccccataaagatttaacttcatctacttccaaccgttttacttgtgcccctttatcatgt |
14734528 |
T |
|
| Q |
207 |
aaccttgaatatacgttcaggagtataactttactttgtatcacattcctgcttcaactacggctcccacgaaggtctcagaccaatccttggatattct |
306 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
14734527 |
aaccttgaatctgggttcaggagtataactttactttgtatcacattcctacttcaactacggctcccacgaaggtctcagaccaatccctggatattct |
14734428 |
T |
|
| Q |
307 |
taaattcttcaattttccacatacgaaatactgtccaacaatatatacaacaatgttggggtattctaatttgatcctaacatttctttgtgtccccgga |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
14734427 |
taaattcttcaattttccacatacgaaatactgtccaacaatatatacaacaatgttggggtattctaatttgatcctaacatttctctgtgtccccgga |
14734328 |
T |
|
| Q |
407 |
ggaatccaacttaaacttctcagttcaccagccaccttttggaatgagtagattcttactattagtcactacgagttcttacttcctagttcatctcaat |
506 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
14734327 |
ggaatccaacttaaacttctcagttcaccggccaccttttggaatgagtagattcttactattagtcactacgagttcttacttcctagttcatctccat |
14734228 |
T |
|
| Q |
507 |
cacacgcttcgttcctcctaggtcctattcagctctcagacatcaattataactgtcgtgtgatagattgagttgatcaggctcagctagcaacaacact |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14734227 |
cacacgcttcgttcctcctaggtcctattcagctctcagacatcaattataactcccgtgtgatagattgagttgatcaggctcagctagcaacaacact |
14734128 |
T |
|
| Q |
607 |
tagaataa |
614 |
Q |
| |
|
|||||||| |
|
|
| T |
14734127 |
tagaataa |
14734120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 196 - 614
Target Start/End: Complemental strand, 15595157 - 15594737
Alignment:
| Q |
196 |
ctttatcatgtaaccttgaatatacgttcaggagtataactttactttgtatcacattcctgctt--caactacggctcccacgaaggtctcagaccaat |
293 |
Q |
| |
|
||||||| ||||||||||||| | ||||||||||||||||||| || | ||||||| |||||||| ||||||||||| | | | ||| ||||| |||| |
|
|
| T |
15595157 |
ctttatcctgtaaccttgaatctgcgttcaggagtataacttttctctatatcacactcctgcttttcaactacggcttctagtacggtgtcagatcaat |
15595058 |
T |
|
| Q |
294 |
ccttggatattcttaaattcttcaattttccacatacgaaatactgtccaacaatatatacaacaatgttggggtattctaatttgatcctaacatttct |
393 |
Q |
| |
|
||||||||| |||| ||| |||| ||||||||||||||| |||| | ||||||| | | ||||| | |||||||| || | ||| || |||||| || |
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|
| T |
15595057 |
ccttggatactcttgaatctttcacttttccacatacgaagtactattcaacaatgtgtccaacactattggggtactccattttactcttaacatcact |
15594958 |
T |
|
| Q |
394 |
ttgtgtccccggaggaatccaacttaaacttctcagttcaccagccaccttttggaa-tgagtagattcttactattagtcactacgagttcttacttcc |
492 |
Q |
| |
|
||| || ||||||| | | ||| ||||||||||| || | |||||||||||| | |||| | | | ||| || | | | ||||||| |||||| |
|
|
| T |
15594957 |
cgatgttcc-ggaggaacctatcttcaacttctcagtccatcggccaccttttggcactgagcatttccataccatcacttgttctgagttctgacttcc |
15594859 |
T |
|
| Q |
493 |
tagttcatctcaatcacacgcttcgttcctcctaggtcctattcagctctcagacatcaattataactgtcgtgtgatagattgagttgatcaggctcag |
592 |
Q |
| |
|
| |||||||| | | || |||||||||||||||||| ||||||||||||||||||| || |||||||| | | ||||||||||||||||||||||| |
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|
| T |
15594858 |
tgattcatctccgttatacacttcgttcctcctaggtcatattcagctctcagacatcttttctaactgtcatatactagattgagttgatcaggctcag |
15594759 |
T |
|
| Q |
593 |
ctagcaacaacacttagaataa |
614 |
Q |
| |
|
|||| ||| ||||||||||||| |
|
|
| T |
15594758 |
ctagtaacgacacttagaataa |
15594737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 518 - 549
Target Start/End: Complemental strand, 31131211 - 31131180
Alignment:
| Q |
518 |
ttcctcctaggtcctattcagctctcagacat |
549 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
31131211 |
ttcctcctaggtcctattcagctctcagacat |
31131180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 15595418 - 15595342
Alignment:
| Q |
79 |
tgacacttaagattcgggaggcgcgat--ctctgacagagtctgactaacttacattgcttacttaattacctcataa |
154 |
Q |
| |
|
||||||||||||||||||||| ||| | |||||||||||| || ||||| || ||||||||||| ||||||||||| |
|
|
| T |
15595418 |
tgacacttaagattcgggaggtgcggtcactctgacagagtttggctaac-tatgttgcttacttagttacctcataa |
15595342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 479 - 596
Target Start/End: Original strand, 21387 - 21504
Alignment:
| Q |
479 |
gagttcttacttcctagttcatctcaatcacacgcttcgttcctcctaggtcctattcagctctcagacatcaattataactgtcgtgtgatagattgag |
578 |
Q |
| |
|
|||| |||||| ||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||| || ||| |||| ||| ||||||||| |
|
|
| T |
21387 |
gagtccttactccctagttcatctccatcacatacttcgttcctcctaggttctattcagctctcagacatttgttctaaatgtcatgtactagattgag |
21486 |
T |
|
| Q |
579 |
ttgatcaggctcagctag |
596 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
21487 |
ttgatcaggctcagctag |
21504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 479 - 596
Target Start/End: Complemental strand, 14818324 - 14818207
Alignment:
| Q |
479 |
gagttcttacttcctagttcatctcaatcacacgcttcgttcctcctaggtcctattcagctctcagacatcaattataactgtcgtgtgatagattgag |
578 |
Q |
| |
|
|||| |||||| ||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||| || ||| |||| ||| ||||||||| |
|
|
| T |
14818324 |
gagtccttactccctagttcatctccatcacatacttcgttcctcctaggttctattcagctctcagacatttgttctaaatgtcatgtactagattgag |
14818225 |
T |
|
| Q |
579 |
ttgatcaggctcagctag |
596 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
14818224 |
ttgatcaggctcagctag |
14818207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 494 - 611
Target Start/End: Complemental strand, 14284150 - 14284033
Alignment:
| Q |
494 |
agttcatctcaatcacacgcttcgttcctcctaggtcctattcagctctcagacatcaattataactgtcgtgtgatagattgagttgatcaggctcagc |
593 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||| ||||||||||||| |||| || ||| |||| || || |||||||||||||||||||| |
|
|
| T |
14284150 |
agttcatctccatcacatacttcgttcctcctaggtccgattcagctctcaggcatccatcctaatcgtcgaatgttaaattgagttgatcaggctcagt |
14284051 |
T |
|
| Q |
594 |
tagcaacaacacttagaa |
611 |
Q |
| |
|
|| |||| ||| |||||| |
|
|
| T |
14284050 |
taacaactacaattagaa |
14284033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 512 - 596
Target Start/End: Original strand, 13701543 - 13701627
Alignment:
| Q |
512 |
gcttcgttcctcctaggtcctattcagctctcagacatcaattataactgtcgtgtgatagattgagttgatcaggctcagctag |
596 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||| |||| || |||||||| | | ||| |||||||||||||||||||||| |
|
|
| T |
13701543 |
gcttcattcctcctaggtcttattcagctctcaaacatttgttctaactgtcatatactagtctgagttgatcaggctcagctag |
13701627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 512 - 596
Target Start/End: Original strand, 13712036 - 13712120
Alignment:
| Q |
512 |
gcttcgttcctcctaggtcctattcagctctcagacatcaattataactgtcgtgtgatagattgagttgatcaggctcagctag |
596 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||| |||| || |||||||| | | ||| |||||||||||||||||||||| |
|
|
| T |
13712036 |
gcttcattcctcctaggtcttattcagctctcaaacatttgttctaactgtcatatactagtctgagttgatcaggctcagctag |
13712120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 431 - 604
Target Start/End: Complemental strand, 21339725 - 21339554
Alignment:
| Q |
431 |
tcaccagccaccttttggaatgagtagattcttactattagtcactacgagttcttacttcctagttcatctcaatcacacgcttcgttcctcctaggtc |
530 |
Q |
| |
|
||||| ||||||||||||| ||||| ||| |||||| | | | || ||||||| |||||| ||| ||||| |||||| || ||||||||||||| |
|
|
| T |
21339725 |
tcaccggccaccttttggagtgagtggatccttactgtcacttgctccgagttcatacttctgagt--atctccatcacataatttgttcctcctaggtt |
21339628 |
T |
|
| Q |
531 |
ctattcagctctcagacatcaattataactgtcgtgtgatagattgagttgatcaggctcagctagcaacaaca |
604 |
Q |
| |
|
||||||||||||||| |||| || ||||||||||||| || ||||||||||||||||||| || |||||||| |
|
|
| T |
21339627 |
ctattcagctctcaggcatccgttctaactgtcgtgtgctaaattgagttgatcaggctcaattaacaacaaca |
21339554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0158
Description:
Target: scaffold0158; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 510 - 544
Target Start/End: Complemental strand, 499 - 465
Alignment:
| Q |
510 |
acgcttcgttcctcctaggtcctattcagctctca |
544 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
499 |
acgcttcattcctcctaggtcctattcagctctca |
465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 510 - 548
Target Start/End: Original strand, 22219198 - 22219236
Alignment:
| Q |
510 |
acgcttcgttcctcctaggtcctattcagctctcagaca |
548 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
22219198 |
acgcttcattcctcctaggccctattcagctctcagaca |
22219236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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