View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15024_low_55 (Length: 253)

Name: NF15024_low_55
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15024_low_55
NF15024_low_55
[»] chr1 (2 HSPs)
chr1 (1-222)||(25867365-25867586)
chr1 (1-236)||(16961443-16961672)
[»] chr3 (1 HSPs)
chr3 (1-235)||(46595567-46595789)
[»] chr4 (1 HSPs)
chr4 (1-210)||(47520834-47521044)
[»] chr6 (5 HSPs)
chr6 (1-235)||(4435050-4435272)
chr6 (70-234)||(4091500-4091664)
chr6 (1-128)||(28057109-28057236)
chr6 (63-215)||(28057249-28057389)
chr6 (1-70)||(4091400-4091469)
[»] chr5 (3 HSPs)
chr5 (1-236)||(37719805-37720028)
chr5 (116-164)||(30441054-30441102)
chr5 (3-70)||(30441237-30441307)
[»] chr7 (1 HSPs)
chr7 (1-61)||(20389977-20390037)


Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 25867365 - 25867586
Alignment:
Q  1 ttgagcgggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatcccttcactatatgcatttaaatcattacatatttcccatgtaca 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25867365 ttgagcgggaaaattttgctaatacctcacttaatgcctttttcaaatttcaaatcccttcactatatgcatttaaagcattacatatttcccatgtaca 25867464  T
Q  101 tttacatggttgtgtataaagcagttcccatgtaaagttaaaagtaacatcgtaaatgacaaatatagtctatgatgcagttccgatgcattacattccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  25867465 tttacatggttgtgtataaagcagttcccatgtaaagttaaaagtaacatcgtaaatgacaaatatagtctatgatgcaattccaatgcattacattccc 25867564  T
Q  201 cttttccttatatcacacactc 222  Q
     || ||||||||||||||||||    
T  25867565 attatccttatatcacacactc 25867586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 16961672 - 16961443
Alignment:
Q  1 ttgagcgggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatcccttcactatatgc-atttaaatcattacatatttcccatgtac 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||| ||||||| ||||||||||||| |||| ||    
T  16961672 ttgagcgggaaaattttgctaatacctcacttaatgccattttcaaat-------cccttcactatatgccatttaaagcattacatatttctcatgcac 16961580  T
Q  100 atttacatggttgtgtataaagcagttcccatgtaaagttaaaagtaacatcgtaaatgacaaatatagtctatgatgcagttccgatgcattacattcc 199  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  16961579 atttatatggttgtgtataaagcagttcccatgtaaagttaaaagtaacattgtaaatgacaaatatagtctatgatgcggttccaatgcattacattcc 16961480  T
Q  200 ccttttccttatatcacacactcaatgcctcttaacc 236  Q
    | || |||||||||||||| |||||||||||||||||    
T  16961479 cgttatccttatatcacacgctcaatgcctcttaacc 16961443  T

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Target: chr3 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 46595789 - 46595567
Alignment:
Q  1 ttgagcgggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatcccttcactatatgcatttaaatcattacatatttcccatgtaca 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46595789 ttgagcaggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatcccttcactatatgcatttaaagcattacatatttcccatgtaca 46595690  T
Q  101 tttacatggttgtgtataaagcagttcccatgtaaagttaaaagtaacatcgtaaatgacaaata-tagtctatgatgcagttccgatgcattacattcc 199  Q
    |||| |||||||||||||||||||||||             |||||||||||||||||||||||| || |||||||||| ||||| ||||||||||||||    
T  46595689 tttatatggttgtgtataaagcagttcc-------------aagtaacatcgtaaatgacaaatattaatctatgatgcggttccaatgcattacattcc 46595603  T
Q  200 ccttttccttatatcacacactcaatgcctcttaac 235  Q
    |||| |||||||||||||||||||||||||||||||    
T  46595602 ccttatccttatatcacacactcaatgcctcttaac 46595567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 47520834 - 47521044
Alignment:
Q  1 ttgagcgggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatcccttcactatatgc-atttaaatcattacatatttcccatgtac 99  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||    
T  47520834 ttgagcgggaaaattttgctaatacctcacttaatgtcattttcaaatttcaaatcccttcactatatgccatttaaagcattacatatttcccatgcac 47520933  T
Q  100 atttacatggttgtgtataaagcagttcccatgtaaagttaaaagtaacatcgtaaatgacaaatatagtctatgatgcagttccgatgcattacattcc 199  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||| ||| | ||||||||||||||    
T  47520934 atttatatggttgtgtataaagcagttccgatgtaaagttaaaagtaacattgtaaatgacaaatatagtctatgttgcggtttcaatgcattacattcc 47521033  T
Q  200 ccttttcctta 210  Q
    | || ||||||    
T  47521034 cgttatcctta 47521044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 4435050 - 4435272
Alignment:
Q  1 ttgagcgggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatcccttcactatatgcatttaaatcattacatatttcccatgtaca 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  4435050 ttgagcgggaaaattttgctaatacctcacttaatgtcattttcaaatttcaaatcccttcactatatgcatttaaagcgttacatatttcccatgtaca 4435149  T
Q  101 tttacatggttgtgtataaagcagttcccatgtaaagttaaaagtaacatcgtaaatgacaaata-tagtctatgatgcagttccgatgcattacattcc 199  Q
    ||||||||||||||||||||||||||||             || ||||||||||||||||||||| || |||||||||| ||||| ||||||||||||||    
T  4435150 tttacatggttgtgtataaagcagttcc-------------aaataacatcgtaaatgacaaatattaatctatgatgcggttccaatgcattacattcc 4435236  T
Q  200 ccttttccttatatcacacactcaatgcctcttaac 235  Q
    |||| |||||||||||||||||||||||||||||||    
T  4435237 ccttatccttatatcacacactcaatgcctcttaac 4435272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 70 - 234
Target Start/End: Original strand, 4091500 - 4091664
Alignment:
Q  70 catttaaatcattacatatttcccatgtacatttacatggttgtgtataaagcagttcccatgtaaagttaaaagtaacatcgtaaatgacaaatatagt 169  Q
    |||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  4091500 catttaaagcattacatatttcccatgcacatttatatggttgtgtataaagcagttcccatgtaaagttaaaaataacattgtaaatgacaaatatagt 4091599  T
Q  170 ctatgatgcagttccgatgcattacattccccttttccttatatcacacactcaatgcctcttaa 234  Q
    ||||||||||||||| ||||||||||||||| || ||||||||||||||  ||||||||||||||    
T  4091600 ctatgatgcagttccaatgcattacattcccgttatccttatatcacacgttcaatgcctcttaa 4091664  T

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Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 28057109 - 28057236
Alignment:
Q  1 ttgagcgggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatcccttcactatatgcatttaaatcattacatatttcccatgtaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  28057109 ttgagcgggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatcccttctctatatgcatttaaagcattacatatttcccatgtaca 28057208  T
Q  101 tttacatggttgtgtataaagcagttcc 128  Q
    ||||||||||||||||||||||||||||    
T  28057209 tttacatggttgtgtataaagcagttcc 28057236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 63 - 215
Target Start/End: Complemental strand, 28057389 - 28057249
Alignment:
Q  63 ctatatgcatttaaatcattacatatttcccatgtacatttacatggttgtgtataaagcagttcccatgtaaagttaaaagtaacatcgtaaatgacaa 162  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||    
T  28057389 ctatatgcatttaaagcattacatatttcccatgtacatttacatggttgtgtataaagcagttcc-------------aagtaacatcgtaaatgacaa 28057303  T
Q  163 ata-tagtctatgatgcagttccgatgcattacattccccttttccttatatca 215  Q
    ||| || |||||||||| ||||| |||||||||||||||||| |||||||||||    
T  28057302 atattaatctatgatgcggttccaatgcattacattccccttatccttatatca 28057249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 4091400 - 4091469
Alignment:
Q  1 ttgagcgggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatcccttcactatatgc 70  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4091400 ttgagcgggaaaattttgttaatacctcacttaatgccattttcaaatttcaaatcccttcactatatgc 4091469  T

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Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 37720028 - 37719805
Alignment:
Q  1 ttgagcgggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatcccttcactatatgcatttaaatcattacatatttcccatgtaca 100  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||    
T  37720028 ttgagcgggaagattttgctaatacctcacttaatgtcattttcaaatttcaaatcccttcactgtatgtatttaaagcattacatatttcccatgtaca 37719929  T
Q  101 tttacatggttgtgtataaagcagttcccatgtaaagttaaaagtaacatcgtaaatgacaaata-tagtctatgatgcagttccgatgcattacattcc 199  Q
    ||||||||||||||||||||||||||||             |||||||||||||||||||||||| ||||||||||| | ||||| ||||||||||||||    
T  37719928 tttacatggttgtgtataaagcagttcc-------------aagtaacatcgtaaatgacaaatattagtctatgatacggttccaatgcattacattcc 37719842  T
Q  200 ccttttccttatatcacacactcaatgcctcttaacc 236  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  37719841 ccttatccttatatcacacacttaatgcctcttaacc 37719805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 30441102 - 30441054
Alignment:
Q  116 ataaagcagttcccatgtaaagttaaaagtaacatcgtaaatgacaaat 164  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30441102 ataaagcagttcccatgtaaagttaaaagtaacattgtaaatgacaaat 30441054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 30441307 - 30441237
Alignment:
Q  3 gagcgggaaaattttgctaatac---ctcacttaatgccattttcaaatttcaaatcccttcactatatgc 70  Q
    |||||||||| |||||||||||    | || |||||||||||||||||||||||||| |||||||||||||    
T  30441307 gagcgggaaacttttgctaataatatcacatttaatgccattttcaaatttcaaatctcttcactatatgc 30441237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 20389977 - 20390037
Alignment:
Q  1 ttgagcgggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatcccttc 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20389977 ttgagcgggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatcccttc 20390037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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