View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15024_low_60 (Length: 234)
Name: NF15024_low_60
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 7218368 - 7218154
Alignment:
| Q |
1 |
taccaaaaaagatgaaaacattgaataaggtgtgattcagtaactaacccttataattgcatcgattacacatctcctcgatggaattcaggagagtgat |
100 |
Q |
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| T |
7218368 |
taccaaaaaagatgaaaacattgaataaggtgtgattcagtaactaacccttataattgcatcgattacacatctcctcgatggaattcaggagagtgat |
7218269 |
T |
|
| Q |
101 |
gtcatgatcaattgcaagaaccttgagaccttctgggaatgatgcaggtttctcggtgaaaagggccattgcaattttgtcaagaaagtaacggaattag |
200 |
Q |
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| T |
7218268 |
gtcatgatcaattgcaagaaccttgagaccttctgggaatgatgcaggtttgtcggtgaaaagggccattgcaattttgtcaagaaagtaacggaatgag |
7218169 |
T |
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| Q |
201 |
tttcttagggtagaa |
215 |
Q |
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||||||||||||||| |
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| T |
7218168 |
tttcttagggtagaa |
7218154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 8162082 - 8161891
Alignment:
| Q |
1 |
taccaaaaaagatgaaaacattgaataaggtgtgattcagtaactaacccttataattgcatcgattacacatctcctcgatggaattcaggagagtgat |
100 |
Q |
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| T |
8162082 |
taccaaaaaagatggatactttaaataaggtatgattcagtacctaaccttgataattgcatcgattacacatctcctcgatggaattaaggagagtgat |
8161983 |
T |
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| Q |
101 |
gtcatgatcaattgcaagaaccttgagaccttctgggaatgatgcaggtttctcggtgaaaagggccattgcaattttgtcaagaaagtaacgga |
195 |
Q |
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| T |
8161982 |
gtcatgatcaattgcaaggacctagagaccttctgggaatgat---ggtttgtcaatgaaaagggtcattgcaattttgtcaggaaagaaacgga |
8161891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 61 - 144
Target Start/End: Original strand, 7317778 - 7317861
Alignment:
| Q |
61 |
atcgattacacatctcctcgatggaattcaggagagtgatgtcatgatcaattgcaagaaccttgagaccttctgggaatgatg |
144 |
Q |
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| T |
7317778 |
atcgattacacatctcctcaatagagttgaggaaagtgatgtcatgatcaattgcaataaccttgagaccggctgggaatgatg |
7317861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 7243809 - 7243708
Alignment:
| Q |
43 |
actaacccttataattgcatcgattacacatctcctcgatggaattcaggagagtgatgtcatgatcaattgcaagaaccttgagaccttctgggaatga |
142 |
Q |
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| T |
7243809 |
actaaccttgataatggaatcgattacacatatcctcaatagtgttaagaacagtgatgtcatgatcaatagcaataaccttgagaccagcagggaatga |
7243710 |
T |
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| Q |
143 |
tg |
144 |
Q |
| |
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|| |
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| T |
7243709 |
tg |
7243708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 22766557 - 22766662
Alignment:
| Q |
39 |
agtaactaacccttataattgcatcgattacacatctcctcgatggaattcaggagagtgatgtcatgatcaattgcaagaaccttgagaccttctggga |
138 |
Q |
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||||||||||| | ||||| |||||||||||||||||||| |||| || |||| |||| |||||||||||||||||| ||| |||||||| || |||| |
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| T |
22766557 |
agtaactaaccttgataatgacatcgattacacatctcctcaatggtgttaaggaaagtggtgtcatgatcaattgcaataacgttgagaccatcaggga |
22766656 |
T |
|
| Q |
139 |
atgatg |
144 |
Q |
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|||||| |
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| T |
22766657 |
atgatg |
22766662 |
T |
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