View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15024_low_63 (Length: 212)

Name: NF15024_low_63
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15024_low_63
NF15024_low_63
[»] chr4 (4 HSPs)
chr4 (14-199)||(56039341-56039526)
chr4 (14-91)||(31943854-31943929)
chr4 (52-91)||(9579576-9579615)
chr4 (52-91)||(9585271-9585310)
[»] chr8 (5 HSPs)
chr8 (21-91)||(30694201-30694271)
chr8 (14-91)||(23448864-23448941)
chr8 (14-90)||(9256079-9256155)
chr8 (14-91)||(28846227-28846304)
chr8 (61-90)||(13152837-13152866)
[»] chr2 (1 HSPs)
chr2 (14-91)||(28841034-28841111)
[»] chr1 (3 HSPs)
chr1 (21-91)||(9636749-9636819)
chr1 (53-91)||(40865023-40865061)
chr1 (44-88)||(52754226-52754270)
[»] chr7 (4 HSPs)
chr7 (38-87)||(9230140-9230189)
chr7 (54-91)||(25024072-25024109)
chr7 (14-64)||(26786706-26786756)
chr7 (53-91)||(28041604-28041642)
[»] chr3 (3 HSPs)
chr3 (14-91)||(55194670-55194747)
chr3 (30-91)||(3857342-3857403)
chr3 (44-91)||(22527216-22527263)
[»] chr6 (3 HSPs)
chr6 (54-90)||(30621172-30621208)
chr6 (20-91)||(8035898-8035969)
chr6 (53-90)||(25599053-25599090)
[»] chr5 (2 HSPs)
chr5 (29-82)||(3055132-3055185)
chr5 (54-91)||(27169272-27169309)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 8e-94; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 56039526 - 56039341
Alignment:
Q  14 attatatcattcacccaaaccaacactcattactcataaaaatactcaatacttacataaatcaaaatctatatatacaactcatttaatttacgacaaa 113  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56039526 attatatgattcacccaaaccaacactcattactcatagaaatactcaatacttacataaatcaaaatctatatatacaactcatttaatttacgacaaa 56039427  T
Q  114 gctaaattaataccacattttttgtagtgagtcatagaaatgccaacgacttcatgaactaatgagaaccaatagattcctatgct 199  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56039426 gctaaattaataccacattttttgtagcgagtcatagaaatgccaacgacttcatgaactaatgagaaccaatagattcctatgct 56039341  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 31943854 - 31943929
Alignment:
Q  14 attatatcattcacccaaaccaacactcattactcataaaaatactcaatacttacataaatcaaaatctatatatac 91  Q
    |||||| |||||||||||||||||  ||| |||||| |||||||||||||||| ||||||||||||||||||||||||    
T  31943854 attataccattcacccaaaccaac--tcaatactcacaaaaatactcaatactcacataaatcaaaatctatatatac 31943929  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 91
Target Start/End: Original strand, 9579576 - 9579615
Alignment:
Q  52 aaaatactcaatacttacataaatcaaaatctatatatac 91  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9579576 aaaatactcaatacttacataaatcaaaatctatatatac 9579615  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 91
Target Start/End: Original strand, 9585271 - 9585310
Alignment:
Q  52 aaaatactcaatacttacataaatcaaaatctatatatac 91  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9585271 aaaatactcaatacttacataaatcaaaatctatatatac 9585310  T

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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 30694201 - 30694271
Alignment:
Q  21 cattcacccaaaccaacactcattactcataaaaatactcaatacttacataaatcaaaatctatatatac 91  Q
    |||| ||||||| ||| ||||| |||||| |||||||||||||||| ||||||||||||||||||||||||    
T  30694201 cattaacccaaatcaatactcaatactcacaaaaatactcaatactcacataaatcaaaatctatatatac 30694271  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 23448864 - 23448941
Alignment:
Q  14 attatatcattcacccaaaccaacactcattactcataaaaatactcaatacttacataaatcaaaatctatatatac 91  Q
    |||||||||||||||||||| || |||||||||||  | ||||||||||| || ||| ||||||||||||||||||||    
T  23448864 attatatcattcacccaaacaaatactcattactctcataaatactcaatgctcacagaaatcaaaatctatatatac 23448941  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 9256079 - 9256155
Alignment:
Q  14 attatatcattcacccaaaccaacactcattactcataaaaatactcaatacttacataaatcaaaatctatatata 90  Q
    |||||| |||||||||||||||| | ||| |||||| | |||||||||||||| |||| ||||||||||||||||||    
T  9256079 attataccattcacccaaaccaataatcaatactcacataaatactcaatactcacatcaatcaaaatctatatata 9256155  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 28846227 - 28846304
Alignment:
Q  14 attatatcattcacccaaaccaacactcattactcataaaaatactcaatacttacataaatcaaaatctatatatac 91  Q
    |||||| |||||||| ||||||  ||||| |||||||| ||||| |||||||| ||| ||||||||||||||||||||    
T  28846227 attataccattcacctaaaccattactcaatactcatagaaatagtcaatactcacagaaatcaaaatctatatatac 28846304  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 90
Target Start/End: Complemental strand, 13152866 - 13152837
Alignment:
Q  61 aatacttacataaatcaaaatctatatata 90  Q
    ||||||||||||||||||||||||||||||    
T  13152866 aatacttacataaatcaaaatctatatata 13152837  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 28841034 - 28841111
Alignment:
Q  14 attatatcattcacccaaaccaacactcattactcataaaaatactcaatacttacataaatcaaaatctatatatac 91  Q
    |||||| |||||||||||||||| | ||| ||| || | |||||||||||||| ||||||||||||||||||| ||||    
T  28841034 attataccattcacccaaaccaatattcaatacccacataaatactcaatactcacataaatcaaaatctatacatac 28841111  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 9636749 - 9636819
Alignment:
Q  21 cattcacccaaaccaacactcattactcataaaaatactcaatacttacataaatcaaaatctatatatac 91  Q
    |||||||| ||||||| | ||| |||||| |||||||||||||| | ||| ||||||||||||||||||||    
T  9636749 cattcacctaaaccaataatcaatactcacaaaaatactcaataatcacagaaatcaaaatctatatatac 9636819  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 40865061 - 40865023
Alignment:
Q  53 aaatactcaatacttacataaatcaaaatctatatatac 91  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  40865061 aaatactcaatactcacataaatcaaaatttatatatac 40865023  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 52754270 - 52754226
Alignment:
Q  44 tactcataaaaatactcaatacttacataaatcaaaatctatata 88  Q
    |||||| |||||||||||||||| ||||||||||| || ||||||    
T  52754270 tactcacaaaaatactcaatactcacataaatcaatatatatata 52754226  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 9230140 - 9230189
Alignment:
Q  38 actcattactcataaaaatactcaatacttacataaatcaaaatctatat 87  Q
    ||||| |||||| |||||||||||||||| ||||||||||||||||||||    
T  9230140 actcaatactcacaaaaatactcaatactcacataaatcaaaatctatat 9230189  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 25024072 - 25024109
Alignment:
Q  54 aatactcaatacttacataaatcaaaatctatatatac 91  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  25024072 aatactcaatactcacataaatcaaaatctatatatac 25024109  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 26786756 - 26786706
Alignment:
Q  14 attatatcattcacccaaaccaacactcattactcataaaaatactcaata 64  Q
    |||||| |||||||||||||||| | ||| |||||| ||||||||||||||    
T  26786756 attataccattcacccaaaccaatattcaatactcacaaaaatactcaata 26786706  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 28041642 - 28041604
Alignment:
Q  53 aaatactcaatacttacataaatcaaaatctatatatac 91  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  28041642 aaatactcaatactcacataaatcaaaatgtatatatac 28041604  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 55194670 - 55194747
Alignment:
Q  14 attatatcattcacccaaaccaacactcattactcataaaaatactcaatacttacataaatcaaaatctatatatac 91  Q
    |||||| ||||||||||||||||  || | ||||||   |||||||||||||  ||||||||||||||||||||||||    
T  55194670 attataccattcacccaaaccaatgcttaatactcacggaaatactcaatacccacataaatcaaaatctatatatac 55194747  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 3857403 - 3857342
Alignment:
Q  30 aaaccaacactcattactcataaaaatactcaatacttacataaatcaaaatctatatatac 91  Q
    ||||||| ||||| || ||| |||||||||||||||| | | ||||||||||||||||||||    
T  3857403 aaaccaatactcaatattcacaaaaatactcaatactcatagaaatcaaaatctatatatac 3857342  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 22527216 - 22527263
Alignment:
Q  44 tactcataaaaatactcaatacttacataaatcaaaatctatatatac 91  Q
    |||||| | |||||||||||||| ||| ||||||||||||||||||||    
T  22527216 tactcacataaatactcaatactcacaaaaatcaaaatctatatatac 22527263  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 30621172 - 30621208
Alignment:
Q  54 aatactcaatacttacataaatcaaaatctatatata 90  Q
    |||||||||||||||||||||||||||||||||||||    
T  30621172 aatactcaatacttacataaatcaaaatctatatata 30621208  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 8035969 - 8035898
Alignment:
Q  20 tcattcacccaaaccaacactcattactcataaaaatactcaatacttacataaatcaaaatctatatatac 91  Q
    ||||||||| || |||| ||||| |||||||| |||||||||||||| | | || |||||||||||||||||    
T  8035969 tcattcaccaaatccaatactcaatactcatagaaatactcaatactcataaaattcaaaatctatatatac 8035898  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 25599053 - 25599090
Alignment:
Q  53 aaatactcaatacttacataaatcaaaatctatatata 90  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  25599053 aaatactcaatacttacagaaatgaaaatctatatata 25599090  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 3055132 - 3055185
Alignment:
Q  29 caaaccaacactcattactcataaaaatactcaatacttacataaatcaaaatc 82  Q
    |||||||| ||||| ||| || |||||||||||||||| |||||||||||||||    
T  3055132 caaaccaatactcaatacgcacaaaaatactcaatactcacataaatcaaaatc 3055185  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 27169309 - 27169272
Alignment:
Q  54 aatactcaatacttacataaatcaaaatctatatatac 91  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  27169309 aatactcaatactcacataaatcaaaatcaatatatac 27169272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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