View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15024_low_65 (Length: 206)
Name: NF15024_low_65
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_low_65 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 5e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 22 - 170
Target Start/End: Complemental strand, 49871471 - 49871325
Alignment:
| Q |
22 |
ataggtaatgaagttgggtccataagtaccaaataaatagaaacgtagccctgtccat--tcccctttgtattctcagatcgatgggtcctcgacacaaa |
119 |
Q |
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| T |
49871471 |
ataggtaatgaagttgggtccataagtaccaaataaatagaaacgtagccctgtccatattcccctttgtattcccagat----gggtcctcgacacaaa |
49871376 |
T |
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| Q |
120 |
cattaacatcaataatctcatcataaacaatcatagttagtgttgtatgag |
170 |
Q |
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| T |
49871375 |
cattaacatcaataatctcatcataaacaatcatagttagtgttgtatgag |
49871325 |
T |
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Target: chr7 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 44204040 - 44204117
Alignment:
| Q |
22 |
ataggtaatgaagttgggtccataagtaccaaataaatagaaacgtagccctgtccattcccctttgtattctcagat |
99 |
Q |
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| T |
44204040 |
ataggtaatgaagttggatccatgagtaccaaataaatagaaacgtggccatgcccattcccctttgtgttcccagat |
44204117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 188
Target Start/End: Original strand, 44204231 - 44204313
Alignment:
| Q |
109 |
ctcgacacaaacattaacatcaataatctcatcataaacaatcata---gttagtgttgtatgagtagcccggacaacaaaca |
188 |
Q |
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| T |
44204231 |
ctcgacacaaacattaacattgataatctgattataaacaatcacatatgttattgttgtatcagtaacccagacaacaaaca |
44204313 |
T |
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