View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15024_low_8 (Length: 568)
Name: NF15024_low_8
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15024_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 17 - 329
Target Start/End: Original strand, 39550658 - 39550969
Alignment:
| Q |
17 |
atgaaacaaaaataatttaaatgataaatctattacaatcgtaaaatttaaatgatccatgatgtaatttagcctaaaaaataaattatgtgtgaaagcg |
116 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39550658 |
atgaaacaaaaataacttaaatg-taaatctattacaatcgtaaaatttaaatgatccatgatgtaatttagcctaaaaaataaattatgtgtgaaagcg |
39550756 |
T |
|
| Q |
117 |
ttactgggtcaaactatgtgaatttatgcttatttttggagttgcgccaaactannnnnnnnnctaaccaaatttaattaggtcatttagatgagattag |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39550757 |
ttactgggtcaaactatgtgaatttatgcttatttttggagttgcgccaaactttttttttttctaaccaaatttaattaggtcatttagatgagattag |
39550856 |
T |
|
| Q |
217 |
ctatgtcactgccaannnnnnnnngttgctatttatcaatgtttgggttatatacttgtattagataatatcacatgacattgataattcaagtgtgaca |
316 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39550857 |
ctatgtcactgccaatttttttttgttgctatttatcaatgtttgggttatatacttgtattagataatatcacatgacattgataattcaagtgtgaca |
39550956 |
T |
|
| Q |
317 |
tgtagcaatataa |
329 |
Q |
| |
|
||||||||||||| |
|
|
| T |
39550957 |
tgtagcaatataa |
39550969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 397 - 552
Target Start/End: Original strand, 39551037 - 39551192
Alignment:
| Q |
397 |
tggtcaatatcaaccattcctttcttgatgacacacaagtggagcttatcaatgctttcattccaaacattataatgtaagtgcctaaattcctaaacta |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39551037 |
tggtcaatatcaaccattcctttcttgatgacacacaagtggagcttatcaatgctttcattccaaacattataatgtaagtgcctaaattcctaaacta |
39551136 |
T |
|
| Q |
497 |
tctctaatattgtactacatctttatcccctgacactacatatattaactagtact |
552 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39551137 |
tctctaatattgtactacatctttatcccctgacactacatatattaactagtact |
39551192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 55617659 - 55617713
Alignment:
| Q |
43 |
aatctattacaatcgtaaaatttaaatgatccatgatgtaatttagcctaaaaaa |
97 |
Q |
| |
|
|||||||||||| | | ||||||||| ||||| |||||||||||| ||||||||| |
|
|
| T |
55617659 |
aatctattacaaacctcaaatttaaaggatccctgatgtaatttaacctaaaaaa |
55617713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 55624963 - 55625017
Alignment:
| Q |
43 |
aatctattacaatcgtaaaatttaaatgatccatgatgtaatttagcctaaaaaa |
97 |
Q |
| |
|
|||||||||||| | | ||||||||| ||||| |||||||||||| ||||||||| |
|
|
| T |
55624963 |
aatctattacaaacctcaaatttaaaggatccctgatgtaatttaacctaaaaaa |
55625017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University