View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15024_low_9 (Length: 552)

Name: NF15024_low_9
Description: NF15024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15024_low_9
NF15024_low_9
[»] chr8 (11 HSPs)
chr8 (7-535)||(1795338-1795866)
chr8 (26-535)||(6231653-6232166)
chr8 (26-535)||(5185143-5185654)
chr8 (355-535)||(5195137-5195308)
chr8 (349-535)||(5198773-5198949)
chr8 (367-535)||(5177701-5177860)
chr8 (462-535)||(5207135-5207208)
chr8 (222-267)||(5058903-5058948)
chr8 (219-266)||(5198196-5198243)
chr8 (355-393)||(33861527-33861565)
chr8 (269-318)||(21112654-21112703)
[»] chr7 (4 HSPs)
chr7 (26-535)||(5178835-5179344)
chr7 (269-319)||(22845044-22845094)
chr7 (269-317)||(42233252-42233300)
chr7 (269-318)||(21068983-21069032)
[»] scaffold0003 (1 HSPs)
scaffold0003 (269-319)||(184069-184119)
[»] chr6 (3 HSPs)
chr6 (269-319)||(18857796-18857846)
chr6 (269-319)||(30882566-30882616)
chr6 (475-535)||(1187213-1187273)
[»] chr5 (5 HSPs)
chr5 (269-319)||(3691234-3691284)
chr5 (269-319)||(3875503-3875553)
chr5 (269-319)||(17870566-17870616)
chr5 (269-318)||(10026238-10026287)
chr5 (269-318)||(25541703-25541752)
[»] chr2 (7 HSPs)
chr2 (269-319)||(27510634-27510684)
chr2 (269-318)||(27193733-27193782)
chr2 (269-318)||(27843547-27843596)
chr2 (355-393)||(27194264-27194302)
chr2 (355-393)||(27844078-27844116)
chr2 (355-393)||(35611435-35611473)
chr2 (355-393)||(39441471-39441509)
[»] chr1 (3 HSPs)
chr1 (269-319)||(2330427-2330477)
chr1 (269-319)||(48774293-48774343)
chr1 (269-310)||(36208486-36208527)
[»] scaffold1139 (1 HSPs)
scaffold1139 (269-319)||(2275-2325)
[»] scaffold0356 (3 HSPs)
scaffold0356 (269-319)||(15958-16008)
scaffold0356 (355-394)||(15437-15476)
scaffold0356 (269-319)||(16877-16927)
[»] chr4 (3 HSPs)
chr4 (269-319)||(14146459-14146509)
chr4 (269-318)||(55558033-55558082)
chr4 (355-393)||(31921507-31921545)
[»] chr3 (6 HSPs)
chr3 (269-319)||(11369899-11369949)
chr3 (269-318)||(10001668-10001717)
chr3 (269-318)||(27275656-27275705)
chr3 (355-393)||(41763509-41763547)
chr3 (269-318)||(10111860-10111909)
chr3 (269-318)||(10245545-10245594)
[»] scaffold0262 (1 HSPs)
scaffold0262 (269-318)||(20264-20313)
[»] scaffold0225 (1 HSPs)
scaffold0225 (269-318)||(13204-13253)
[»] scaffold0118 (2 HSPs)
scaffold0118 (269-318)||(27629-27678)
scaffold0118 (269-318)||(24437-24486)
[»] scaffold0029 (1 HSPs)
scaffold0029 (269-318)||(141174-141222)
[»] scaffold0002 (1 HSPs)
scaffold0002 (269-318)||(318641-318689)
[»] scaffold0017 (1 HSPs)
scaffold0017 (269-317)||(187804-187852)


Alignment Details
Target: chr8 (Bit Score: 494; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 7 - 535
Target Start/End: Original strand, 1795338 - 1795866
Alignment:
Q  7 tagataatacttgttcaaaagacagcttgaaaacattacaaggcagtaatccccgtagacatgaagatcatgcagtttttgtagaaaaaatcaacttaaa 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1795338 tagaaaatacttgttcaaaagacagcttgaaaacattacaaggcagtaatccccgtagacatgaaggtcatgcagtttttgtagaaaaaatcaacttaaa 1795437  T
Q  107 gggatcattgcatcatggtgagatgagttatatccaaaaatgttatggtgaaatggaaatcagcagaaggtccttgcttggaagaagcgaaatgcgaatc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1795438 gggatcattgcatcatggtgagatgagttatatccaaaaatgttatggtgaaatggaaatcagcagaaggtccttgcttggaagaagcgaaatgcgaatc 1795537  T
Q  207 acattaactagttatcaatcattggaagataataaagaactacaaataagtaaagccaataataaagaacaaactaagagttactatctctacgataccg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1795538 acattaactagttatcaatcattggaagataataaagaactacaaataagtaaagccaataataaagaacaaactaagagttactatctctacgataccg 1795637  T
Q  307 ttcatcattttccgtagtgtatatcaaaagaaaggtgtcatcatgcatttaagaggtaacatcaaacttcaaagaaaaaacatgtctatgagtttatggc 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1795638 ttcatcattttccgtagtgtatatcaaaagaaaggtgtcatcatgcatttaagaggtaacatcaaacttcaaagaaaaaacatgtctatgagtttatggc 1795737  T
Q  407 agcgtcagcaacattaaaattctaacataaagctnnnnnnnnnttctccatttggcaacaattctagcatggtcttgaaatcaatattctcatcaatctt 506  Q
    ||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1795738 agcgtcagcaacattaaaattctaacataaagctaaaaaaaaattctccatttggcaacaattctagcatggtcttgaaatcaatattctcatcaatctt 1795837  T
Q  507 caccgagcttatgactttcacattcttca 535  Q
    |||||||||||||||||||||||||||||    
T  1795838 caccgagcttatgactttcacattcttca 1795866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 26 - 535
Target Start/End: Complemental strand, 6232166 - 6231653
Alignment:
Q  26 agacagcttgaaaacattacaaggcagtaatccccgtagacatgaagatcatgcagtttttgtagaaaaaatcaacttaaagggatcattgcatcatg-- 123  Q
    |||||||||||||||||| ||||| || ||| ||| | || |  |||||||||||| ||||||||||||||||||||| ||||||||| |||||   |      
T  6232166 agacagcttgaaaacattgcaaggtagcaatgcccattgatacaaagatcatgcagcttttgtagaaaaaatcaacttgaagggatcactgcatggagaa 6232067  T
Q  124 gt--gagatgagttatatccaaaaatgttatggtgaaatggaaatcagcagaaggtccttgcttggaagaagcgaaatgcgaatcacattaactagttat 221  Q
    ||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  6232066 gttggaaatgagttatatccaaaaatgttatggtgaaatggaaatcagcagaaggtccttgcttggaagatgcgaaatgcgaatcacaataactagttat 6231967  T
Q  222 caatcattggaagataataaagaactacaaataagtaaagccaataataaagaacaaac--taagagttactatctctacgataccgttcatcattttcc 319  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||| ||||| ||||||||||||| |||  |||||||    
T  6231966 caatcattggaagataataaataactacaaataagtaaagccaataataaagaacaaactataagagctactaactctacgataccgctcagaattttcc 6231867  T
Q  320 gtagtg-tatatcaaaagaaaggtgtcatcatgcatttaagaggtaacatcaaacttcaaagaaaaaacatgtctatgagtttatggcagcgtcagcaac 418  Q
     ||||| ||||||| || ||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  6231866 atagtgttatatcataacaaatgtgtcatcatgcatttaagaggtaatatcaaacttcaaagtaaaaacatgtctatgagtttatgacagcgtcagcaac 6231767  T
Q  419 attaaaattctaacataaagctnnnnnnnnnttctccatttggcaacaattctagcatggtcttgaaatcaatattctcatcaatcttcaccgagcttat 518  Q
    ||||||||||||||||||||||         | ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||  ||||||||    
T  6231766 attaaaattctaacataaagct---aatttttcctccatttggcaacaattctagcatggtcttgaaatcaatattcttatcattcttcaatgagcttat 6231670  T
Q  519 gactttcacattcttca 535  Q
    |||||||||||||||||    
T  6231669 gactttcacattcttca 6231653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 26 - 535
Target Start/End: Complemental strand, 5185654 - 5185143
Alignment:
Q  26 agacagcttgaaaacattacaaggcagtaatccccgtagacatgaagatcatgcagtttttgtagaaaaaatcaacttaaagggatcattgcatcatg-- 123  Q
    |||||||||||||||||| ||||| || ||| ||| | || | ||||||||||||| ||||||||||||||||||||||||||||||| |||||   |      
T  5185654 agacagcttgaaaacattgcaaggtagcaatgcccattgatacgaagatcatgcagcttttgtagaaaaaatcaacttaaagggatcactgcattgagaa 5185555  T
Q  124 gt--gagatgagttatatccaaaaatgttatggtgaaatggaaatcagca-gaaggtccttgcttggaagaagcgaaatgcgaatcacattaactagtta 220  Q
    ||  || ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| || |||||||||||||| ||||||||||    
T  5185554 gttggaaatgagttatatccaaaaatgttatggtaaaatggaaatcagcaagaaggtccttgcttggaagatgcaaaatgcgaatcacaataactagtta 5185455  T
Q  221 tcaatcattggaagataataaagaactacaaataagtaaagccaataataaagaacaaactaagagttactatctctacgataccgttcatcattttccg 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||     
T  5185454 tcaatcattggaagataataaagaactacaaataagtaaagccaataataaagaacaaactaagagttactaactctacgataccgttcagcattttcca 5185355  T
Q  321 tagtgtatatcaaaagaaaggtgtcatcatgcatttaagaggtaacatcaaacttcaaagaaaaaacatgtctatgagtttatggcagcgtcagcaacat 420  Q
    ||||||||||||||| ||| |||||||  ||||||||||||||||||||||||||  ||| |||||||||||  |||||||||| |||| ||||||||||    
T  5185354 tagtgtatatcaaaacaaatgtgtcattgtgcatttaagaggtaacatcaaactttgaagtaaaaacatgtcactgagtttatgacagcatcagcaacat 5185255  T
Q  421 taaaattctaacataaagctnnnnnnnnnttctccatttggcaacaattctagcatggtcttgaaatcaatattctcatcaatcttcaccgagcttatga 520  Q
    ||||| ||||||| ||||||         |||| || |||||||||||||||||||||||||||| |||||||| |||||||||||||  ||||||||||    
T  5185254 taaaactctaacacaaagct---aatttcttcttcaattggcaacaattctagcatggtcttgaagtcaatattatcatcaatcttcattgagcttatga 5185158  T
Q  521 ctttcacattcttca 535  Q
    |||||||||||||||    
T  5185157 ctttcacattcttca 5185143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 355 - 535
Target Start/End: Complemental strand, 5195308 - 5195137
Alignment:
Q  355 ttaagaggtaacatcaaacttcaaagaaaaaacatgtctatgagtttatggcagcgtcagcaacattaaaattctaacataaagctnnnnnnnnnttctc 454  Q
    ||||||||||| |||||||||||| | ||||||||||||||||||| ||| ||||      ||||||||||||||||||||||| |         |||      
T  5195308 ttaagaggtaaaatcaaacttcaacgtaaaaacatgtctatgagttgatgacagc------aacattaaaattctaacataaagttaatttt---ttcat 5195218  T
Q  455 catttggcaacaattctagcatggtcttgaaatcaatattctcatcaatcttcaccgagcttatgactttcacattcttca 535  Q
    || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5195217 cagttggcaacagttctagcatggtcttgaaatcaatattctcatcaatcttcaccgagcttatgactttcacattcttca 5195137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 349 - 535
Target Start/End: Original strand, 5198773 - 5198949
Alignment:
Q  349 atgcatttaagaggtaacatcaaacttcaaagaaaaaacatgtctatgagtttatggcagcgtcagcaacattaaaattctaacataaagctnnnnnnnn 448  Q
    ||||||||| ||||||| |||||||||||||| ||||||||||||||||||| ||| ||||      ||||||||||||||||||||||| |            
T  5198773 atgcattta-gaggtaaaatcaaacttcaaagtaaaaacatgtctatgagttgatgacagc------aacattaaaattctaacataaagttaatttt-- 5198863  T
Q  449 nttctccatttggcaacaattctagcatggtcttgaaatcaatattctcatcaatcttcaccgagcttatgactttcacattcttca 535  Q
     |||  || ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5198864 -ttcatcagttggcaacagttctagcatggtcttgaaatcaatattatcatcaatcttcaccgagcttatgactttcacattcttca 5198949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 367 - 535
Target Start/End: Complemental strand, 5177860 - 5177701
Alignment:
Q  367 atcaaacttcaaagaaaaaacatgtctatgagtttatggcagcgtcagcaacattaaaattctaacataaagctnnnnnnnnnttctccatttggcaaca 466  Q
    |||||||||||||  ||||||| ||||||||| ||||| ||||      |||||||||||||||||||||| ||         ||||||| |||||||||    
T  5177860 atcaaacttcaaaataaaaacacgtctatgagattatgacagc------aacattaaaattctaacataaaactaatttt---ttctccaattggcaaca 5177770  T
Q  467 attctagcatggtcttgaaatcaatattctcatcaatcttcaccgagcttatgactttcacattcttca 535  Q
    ||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||    
T  5177769 attctagcatggtcttgaagtcaatattatcatcaatcttcactgagcttatgactttcacattcttca 5177701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 462 - 535
Target Start/End: Complemental strand, 5207208 - 5207135
Alignment:
Q  462 caacaattctagcatggtcttgaaatcaatattctcatcaatcttcaccgagcttatgactttcacattcttca 535  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||  |||||  ||||||| |||| |||||    
T  5207208 caacaattctaacatggtcttgaaatcaacattctcatcaatcttcatagagctcgtgacttttacatccttca 5207135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 5058903 - 5058948
Alignment:
Q  222 caatcattggaagataataaagaactacaaataagtaaagccaata 267  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  5058903 caatcattggaagataataaagaactacaaataagtatagctaata 5058948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 266
Target Start/End: Original strand, 5198196 - 5198243
Alignment:
Q  219 tatcaatcattggaagataataaagaactacaaataagtaaagccaat 266  Q
    |||| |||||||||||||||||||||||| |||||||| ||| |||||    
T  5198196 tatcgatcattggaagataataaagaactgcaaataagcaaatccaat 5198243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 393
Target Start/End: Original strand, 33861527 - 33861565
Alignment:
Q  355 ttaagaggtaacatcaaacttcaaagaaaaaacatgtct 393  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  33861527 ttaagaggtaacataaaacttcaaagtaaaaacatgtct 33861565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 318
Target Start/End: Original strand, 21112654 - 21112703
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttc 318  Q
    ||||||| |||||||||||||||| ||||| |||||| |||| |||||||    
T  21112654 taaagaaaaaactaagagttactaactctatgataccattcaacattttc 21112703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 26 - 535
Target Start/End: Complemental strand, 5179344 - 5178835
Alignment:
Q  26 agacagcttgaaaacattacaaggcagtaatccccgtagacatgaagatcatgcagtttttgtagaaaaaa-tcaacttaaagggatcattgcatcatg- 123  Q
    |||||||||||||||||| ||||| |||||| ||| |||| | ||||||||||||| |||||||||||||| |||||||||||||||||||||||   |     
T  5179344 agacagcttgaaaacattgcaaggtagtaattcccatagatacgaagatcatgcagcttttgtagaaaaaaatcaacttaaagggatcattgcatggaga 5179245  T
Q  124 -gt--gagatgagttatatccaaaaatgttatggtgaaatggaaatcagcagaaggtccttgcttggaagaagcgaaatgcgaatcacattaactagtta 220  Q
     ||  || |||||||||||||||||||||| ||   |||||||||||||||||||||||||| |||||||| |||||||| |||||| | ||| ||||||    
T  5179244 agttggaaatgagttatatccaaaaatgttctgacaaaatggaaatcagcagaaggtccttgtttggaagatgcgaaatgtgaatcataataagtagtta 5179145  T
Q  221 tcaatcattggaagataataaagaactacaaataagtaaagccaataataaagaacaaactaagagttactatctctacgataccgttcatcattttccg 320  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||| ||||||||     
T  5179144 tcaatcattggaagataataaagaacgactaataagtaaagccaataataaagaacaaactaagagttactaactctacgatactattcagcattttcca 5179045  T
Q  321 tagtgtatatcaaaagaaaggtgtcatcatgcatttaagaggtaacatcaaacttcaaagaaaaaacatgtctatgagtttatggcagcgtcagcaacat 420  Q
    |||||  |||||||| ||| ||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||| ||||||    
T  5179044 tagtg--tatcaaaacaaatgtggcatcatgcatttaagaggtaacatcaaacttcgaagtaaaaacatgtctatgagtttatgacagcgtcaacaacat 5178947  T
Q  421 taaaattctaacataaagctnnnnnnnnnttctccatttggcaacaattctagcatggtcttgaaatcaatattctcatcaatcttcaccgagcttatga 520  Q
    ||||||||||||||||||||         ||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||  ||||||||||    
T  5178946 taaaattctaacataaagct---aaatttttctccaattggcaacaattctagaatggtcttgaaatcaatattatcatcaatcttcattgagcttatga 5178850  T
Q  521 ctttcacattcttca 535  Q
    |||||||||||||||    
T  5178849 ctttcacattcttca 5178835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 22845094 - 22845044
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttcc 319  Q
    |||||||||||||||||||||||| |||||||| ||| |||| ||||||||    
T  22845094 taaagaacaaactaagagttactaactctacgacaccattcaacattttcc 22845044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 42233300 - 42233252
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcatttt 317  Q
    ||||||| |||||||||||||||| |||||||||||| |||| ||||||    
T  42233300 taaagaaaaaactaagagttactaactctacgataccattcaacatttt 42233252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 318
Target Start/End: Original strand, 21068983 - 21069032
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttc 318  Q
    ||||||| |||||||||||||||| |||||||||| | |||| |||||||    
T  21068983 taaagaaaaaactaagagttactaactctacgatatcattcaacattttc 21069032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 184119 - 184069
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttcc 319  Q
    |||||||||||||||||||||||| |||||||||||| |||| ||||||||    
T  184119 taaagaacaaactaagagttactaactctacgataccattcaacattttcc 184069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 18857846 - 18857796
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttcc 319  Q
    |||||||||||||||||||||||| |||||||||||| |||| ||||||||    
T  18857846 taaagaacaaactaagagttactaactctacgataccattcaacattttcc 18857796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 30882616 - 30882566
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttcc 319  Q
    |||||||||||||||||||||||| |||||||| ||| |||| ||||||||    
T  30882616 taaagaacaaactaagagttactaactctacgacaccattcaacattttcc 30882566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 535
Target Start/End: Complemental strand, 1187273 - 1187213
Alignment:
Q  475 atggtcttgaaatcaatattctcatcaatcttcaccgagcttatgactttcacattcttca 535  Q
    |||||||| |||  || |||||||||||||||||  |||||| |||||||||||| |||||    
T  1187273 atggtcttaaaacaaacattctcatcaatcttcatagagcttgtgactttcacatccttca 1187213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 3691284 - 3691234
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttcc 319  Q
    |||||||||||||||||||||||| |||||||||||| |||| ||||||||    
T  3691284 taaagaacaaactaagagttactaactctacgataccattcaacattttcc 3691234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 269 - 319
Target Start/End: Original strand, 3875503 - 3875553
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttcc 319  Q
    |||||||||||||||||||||||| |||||||||||| |||| ||||||||    
T  3875503 taaagaacaaactaagagttactaactctacgataccattcaacattttcc 3875553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 319
Target Start/End: Original strand, 17870566 - 17870616
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttcc 319  Q
    |||||||||||||||||||||||| |||||||| ||| |||| ||||||||    
T  17870566 taaagaacaaactaagagttactaactctacgacaccattcaacattttcc 17870616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 269 - 318
Target Start/End: Complemental strand, 10026287 - 10026238
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttc 318  Q
    ||||||| |||||||||||||||| |||||||||||| |||| |||||||    
T  10026287 taaagaaaaaactaagagttactaactctacgataccattcaacattttc 10026238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 269 - 318
Target Start/End: Original strand, 25541703 - 25541752
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttc 318  Q
    ||||||| |||||||||||||||| |||||||||||| |||| |||||||    
T  25541703 taaagaaaaaactaagagttactaactctacgataccattcaacattttc 25541752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 27510684 - 27510634
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttcc 319  Q
    |||||||||||||||||||||||| |||||||||||| |||| ||||||||    
T  27510684 taaagaacaaactaagagttactaactctacgataccattcagcattttcc 27510634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 318
Target Start/End: Complemental strand, 27193782 - 27193733
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttc 318  Q
    |||||||||||||||||||||||| |||||||||||| |||| |||||||    
T  27193782 taaagaacaaactaagagttactaactctacgataccattcagcattttc 27193733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 318
Target Start/End: Complemental strand, 27843596 - 27843547
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttc 318  Q
    |||||||||||||||||||||||| |||||||||||| |||| |||||||    
T  27843596 taaagaacaaactaagagttactaactctacgataccattcagcattttc 27843547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 393
Target Start/End: Complemental strand, 27194302 - 27194264
Alignment:
Q  355 ttaagaggtaacatcaaacttcaaagaaaaaacatgtct 393  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  27194302 ttaagaggtaacataaaacttcaaagtaaaaacatgtct 27194264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 393
Target Start/End: Complemental strand, 27844116 - 27844078
Alignment:
Q  355 ttaagaggtaacatcaaacttcaaagaaaaaacatgtct 393  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  27844116 ttaagaggtaacataaaacttcaaagtaaaaacatgtct 27844078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 393
Target Start/End: Complemental strand, 35611473 - 35611435
Alignment:
Q  355 ttaagaggtaacatcaaacttcaaagaaaaaacatgtct 393  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  35611473 ttaagaggtaacataaaacttcaaagtaaaaacatgtct 35611435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 393
Target Start/End: Original strand, 39441471 - 39441509
Alignment:
Q  355 ttaagaggtaacatcaaacttcaaagaaaaaacatgtct 393  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  39441471 ttaagaggtaacataaaacttcaaagtaaaaacatgtct 39441509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 2330477 - 2330427
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttcc 319  Q
    |||||||||||||||||||||||| |||||||||||| |||| ||||||||    
T  2330477 taaagaacaaactaagagttactaactctacgataccattcaacattttcc 2330427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 319
Target Start/End: Original strand, 48774293 - 48774343
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttcc 319  Q
    |||||||||||||||||||||||| |||||||||||| || | ||||||||    
T  48774293 taaagaacaaactaagagttactaactctacgataccattaaacattttcc 48774343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 36208527 - 36208486
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttca 310  Q
    |||||||||||||||||||||||| ||||| |||||||||||    
T  36208527 taaagaacaaactaagagttactaactctatgataccgttca 36208486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1139 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1139
Description:

Target: scaffold1139; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 2325 - 2275
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttcc 319  Q
    |||||||||||||||||||||||| |||||||||| | |||| ||||||||    
T  2325 taaagaacaaactaagagttactaactctacgatatcattcaacattttcc 2275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 319
Target Start/End: Original strand, 15958 - 16008
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttcc 319  Q
    |||||||||||||||||||||||| |||||||||||| || | ||||||||    
T  15958 taaagaacaaactaagagttactaactctacgataccattaagcattttcc 16008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 394
Target Start/End: Original strand, 15437 - 15476
Alignment:
Q  355 ttaagaggtaacatcaaacttcaaagaaaaaacatgtcta 394  Q
    |||||||||||||| ||||||||||| |||||||||||||    
T  15437 ttaagaggtaacataaaacttcaaagtaaaaacatgtcta 15476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 319
Target Start/End: Original strand, 16877 - 16927
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttcc 319  Q
    ||||| |||||||||||||||||| |||||||| ||| |||| ||||||||    
T  16877 taaaggacaaactaagagttactaactctacgacaccattcagcattttcc 16927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 319
Target Start/End: Original strand, 14146459 - 14146509
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttcc 319  Q
    |||||||||||||||||||||||| |||| ||||||| |||| ||||||||    
T  14146459 taaagaacaaactaagagttactaactctccgataccattcagcattttcc 14146509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 269 - 318
Target Start/End: Original strand, 55558033 - 55558082
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttc 318  Q
    ||||||| |||||||||||||||| |||||||||||| |||| |||||||    
T  55558033 taaagaaaaaactaagagttactaactctacgataccattcaacattttc 55558082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 393
Target Start/End: Complemental strand, 31921545 - 31921507
Alignment:
Q  355 ttaagaggtaacatcaaacttcaaagaaaaaacatgtct 393  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  31921545 ttaagaggtaacataaaacttcaaagtaaaaacatgtct 31921507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 11369949 - 11369899
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttcc 319  Q
    |||||||||||||||||||||||| ||| |||||||| |||| ||||||||    
T  11369949 taaagaacaaactaagagttactaactccacgataccattcagcattttcc 11369899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 269 - 318
Target Start/End: Complemental strand, 10001717 - 10001668
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttc 318  Q
    ||||||| |||||||||||||||| |||||||||||| |||| |||||||    
T  10001717 taaagaaaaaactaagagttactaactctacgataccattcaacattttc 10001668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 269 - 318
Target Start/End: Complemental strand, 27275705 - 27275656
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttc 318  Q
    ||||||| |||||||||||||||| |||||||||||| |||| |||||||    
T  27275705 taaagaaaaaactaagagttactaactctacgataccattcaacattttc 27275656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 393
Target Start/End: Original strand, 41763509 - 41763547
Alignment:
Q  355 ttaagaggtaacatcaaacttcaaagaaaaaacatgtct 393  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  41763509 ttaagaggtaacataaaacttcaaagtaaaaacatgtct 41763547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 318
Target Start/End: Complemental strand, 10111909 - 10111860
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttc 318  Q
    ||||||| ||||||||||||| || |||||||||||| |||| |||||||    
T  10111909 taaagaaaaaactaagagttaataactctacgataccattcaacattttc 10111860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 318
Target Start/End: Complemental strand, 10245594 - 10245545
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttc 318  Q
    ||||||| ||||||||||||||||  ||||||||||| |||| |||||||    
T  10245594 taaagaaaaaactaagagttactaaatctacgataccattcaacattttc 10245545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 269 - 318
Target Start/End: Complemental strand, 20313 - 20264
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttc 318  Q
    ||||||| |||||||||||||||| |||||||||||| |||| |||||||    
T  20313 taaagaaaaaactaagagttactaactctacgataccattcaacattttc 20264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 269 - 318
Target Start/End: Original strand, 13204 - 13253
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttc 318  Q
    ||||||| |||||||||||||||| |||||||||||| |||| |||||||    
T  13204 taaagaaaaaactaagagttactaactctacgataccattcaacattttc 13253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 269 - 318
Target Start/End: Original strand, 27629 - 27678
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttc 318  Q
    ||||||| |||||||||||||||| |||||||||||| |||| |||||||    
T  27629 taaagaaaaaactaagagttactaactctacgataccattcaacattttc 27678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 318
Target Start/End: Original strand, 24437 - 24486
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttc 318  Q
    ||||||| |||||||||||||||| |||||| ||||| |||| |||||||    
T  24437 taaagaaaaaactaagagttactaactctacaataccattcaacattttc 24486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 318
Target Start/End: Original strand, 141174 - 141222
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttc 318  Q
    |||||||||| ||||||||||||| |||||||||||| |||| |||||||    
T  141174 taaagaacaa-ctaagagttactaactctacgataccattcaacattttc 141222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 318
Target Start/End: Original strand, 318641 - 318689
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcattttc 318  Q
    |||||||||| ||||||||||||| |||||||||||| |||| |||||||    
T  318641 taaagaacaa-ctaagagttactaactctacgataccattcaacattttc 318689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 187852 - 187804
Alignment:
Q  269 taaagaacaaactaagagttactatctctacgataccgttcatcatttt 317  Q
    ||||||| |||||||||||| ||| |||||||||||| |||| ||||||    
T  187852 taaagaaaaaactaagagttgctaactctacgataccattcaacatttt 187804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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