View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15025_high_13 (Length: 476)
Name: NF15025_high_13
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15025_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 41299214 - 41299534
Alignment:
| Q |
1 |
tgtttttggtatccgggtctgtgtccttttgagatactgagaatgnnnnnnnnnnnnnnnnnnggtggaatgaagatgtttcaactgatggaaaatggtg |
100 |
Q |
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| T |
41299214 |
tgtttttggtatctgggtctgtgtccttttgagatactgagaatgtttttttgtttttgttttggtggaatgaagatgtttcaactgatggaaaatggtg |
41299313 |
T |
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| Q |
101 |
ttatatagtagtgtgggtggtgggaaaagaaaaaacaaggtggagtttgttgaagaaaagactaattgctgcttgtcctacttgttcttctgcttctgga |
200 |
Q |
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| T |
41299314 |
ttatatagtattttgggtggtgggaaaagaaaaaacaaggtggagtttgttgaagaaaagactaattgctgcttgtcctacttgttcttctgcttctgga |
41299413 |
T |
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| Q |
201 |
ttttcttatttctgctctgatttgcagaatcaaaagcctcctgatgtttttcttttgaagttttgttgcaaagatcggaaaggtcttttacatggtaatt |
300 |
Q |
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| T |
41299414 |
ttttcttatttctgctctgatttgcagaatcaaaagcctcctgatgtttttcttttgaagttttgttgcaaagatcggaaaggtcttttacatggtaatt |
41299513 |
T |
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| Q |
301 |
aatcttgggaaactccatttt |
321 |
Q |
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| T |
41299514 |
aatcttgggaaactccatttt |
41299534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 318 - 464
Target Start/End: Original strand, 41299561 - 41299707
Alignment:
| Q |
318 |
ttttccgattaaattgaattgtattataattgattttatttaatctagaccatcaaattgattttagtgaaattatagttgttgaaatgaattagaattg |
417 |
Q |
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| T |
41299561 |
ttttccgattaaattgaattgtattataattgattttatttaatctagaccatcaaattgattttagtgaaattatagttgttgaaatgaattagaattg |
41299660 |
T |
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| Q |
418 |
attttgaattctatcaaactaaaccctcttgggttggtctggtgatg |
464 |
Q |
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| T |
41299661 |
attttgaattctatcaaactaaaccctcttgggttggtcgggtgatg |
41299707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 69 - 300
Target Start/End: Complemental strand, 27664944 - 27664713
Alignment:
| Q |
69 |
aatgaagatgtttcaactgatggaaaatggtgttatatagtagtgtgggtggtgggaaaagaaaaaacaaggtggagtttgttgaagaaaagactaattg |
168 |
Q |
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| T |
27664944 |
aatgaagacgtgtcaactgatggaaagtggtgttacatagttttttgggtggttgggaaacagaagacaaggtggagtttgttgaagaagaggatggttg |
27664845 |
T |
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| Q |
169 |
ctgcttgtcctacttgttcttctgcttctggattttcttatttctgctctgatttgcagaatcaaaagcctcctgatgtttttcttttgaagttttgttg |
268 |
Q |
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| T |
27664844 |
aagcatgtcctacttgctcctcagcttctggaatatcatattatcgcactgatttgcagccacctaaggttcctgatgttttccttttgaaattttgctg |
27664745 |
T |
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| Q |
269 |
caaagatcggaaaggtcttttacatggtaatt |
300 |
Q |
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| T |
27664744 |
tcatgatcgaaaaggactattacacggtaatt |
27664713 |
T |
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