View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15025_high_19 (Length: 432)
Name: NF15025_high_19
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15025_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 57 - 244
Target Start/End: Original strand, 47682278 - 47682465
Alignment:
| Q |
57 |
tcatactaatggaatacacatgactcgttttaattagaaaatatttgatagatattcgcacacccctttgacatcttgaaagagaaaataataaagaagg |
156 |
Q |
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| T |
47682278 |
tcatactaatggaatacacatgactcgttttaattaaaaaatatttgattgatattcggacacctctttgacatcttgaaagagaaaataataaagaagg |
47682377 |
T |
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| Q |
157 |
tgatgtaataaatatgatatgttggtgataagatggaaaagnnnnnnntaagatgttgaatgtaaatgttgctctagacatgcgccaa |
244 |
Q |
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| T |
47682378 |
tgatgtaataaatatgatatgttggtgataagatggaagagaaaaaaataagatgttgaatgtaaatgttgctctagacatgcgccaa |
47682465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 247 - 377
Target Start/End: Original strand, 47682493 - 47682626
Alignment:
| Q |
247 |
caaaggctcacaccacta---atcaaggtatgatcatttactccaaacctcacatgcattaaccacaattacatgttgatgagcgttgaagatgtcttta |
343 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47682493 |
caaaggctcacaccactaccaatcaaggtatgatcatttactccaaacctcacatgcattaaccacaattacatgttgatgagcgttgaagatgtattta |
47682592 |
T |
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| Q |
344 |
atacttcacaattttttataaatgtatagtactt |
377 |
Q |
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| T |
47682593 |
atgcttcacaattttttataaatgtatattactt |
47682626 |
T |
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