View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15025_high_22 (Length: 419)
Name: NF15025_high_22
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15025_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 8816249 - 8815855
Alignment:
| Q |
1 |
acttatcctgaagattcaaaagtgcttataaattgtacatgagtaaacaaagcaagtctaccaatggaagaacacaagtgtcaaagttttcaggtatcct |
100 |
Q |
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| T |
8816249 |
acttatcctgaagattcaaaagtgcttataaattgtacatgagtaaacaaagcaagtctaccaatggaagaacacaagtgtcaaagttttcaggtatcct |
8816150 |
T |
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| Q |
101 |
attggctcaagtaagttaaaatttaatccaaatggaaaatttgaagctgacttttctggtgtacagcaatgaaaagtgctttgcgttacagttagaatat |
200 |
Q |
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| T |
8816149 |
attggctcaggtaagttaaaatttaatccaaatggaaaatttgaagctgacttttctggtgtacagcaatgaaaagtgctttgcgttacagttagaatat |
8816050 |
T |
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| Q |
201 |
ttatgagatgatttcaattacttagacattaaggaaacaattagtactattaacttacatttattactttgttaaattttctagttaatactgtatctga |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8816049 |
ttatgacatgatttcaattacttagacattaaggaaacaattagtactattaacttacatttattactttgttaaattttctagttaa-----tatctga |
8815955 |
T |
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| Q |
301 |
aaacatatgatctactactacatacatcggtaatgtatttgcgagaaagtgagtgttaaagacaagcaagttactgtacatgtttgattatgcataataa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8815954 |
aaacatatgatctactactacatacatcggtaatgtatttgcgagaaagtgagtgttaaagacaagcatgttactgtacatgtttgattatgcataataa |
8815855 |
T |
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