View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15025_high_26 (Length: 386)
Name: NF15025_high_26
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15025_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 9093296 - 9092998
Alignment:
| Q |
1 |
aggatagagagtaaagagcaatggcgcagccagagtctcaacaataagggatcgtcaaagattttatataatttatttatttataactacaatataaata |
100 |
Q |
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| T |
9093296 |
aggatagagagtaaagagcaatggcgcagctagagtctcaacaataagggatcgtcaaagattttatataattaatttatttataactacaatataaata |
9093197 |
T |
|
| Q |
101 |
gagctatgtgttgcattttacatgaattattgataatgagagggaaggatcaaatatcttatttacatgaattatatagtcttttatgtatttgccatta |
200 |
Q |
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| T |
9093196 |
gagctatgtgttgcattttacatgaattattgataatgagagggaaggatcaaatatcttatttacatgaattatatagtcttttatgtatatgccatta |
9093097 |
T |
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| Q |
201 |
tactaaactacatcataaatatgtcataactcataagtatcgataaatattaatagagatgcttatagattaatcacc-gataagattttcatatcaat |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9093096 |
tactaaactacatcataaatatgtcataactcataagtatcgataaatattaatagagatgcttatagattaatcaccanataagattttcatatcaat |
9092998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 347
Target Start/End: Complemental strand, 9092984 - 9092919
Alignment:
| Q |
282 |
aagattttcatatcaataggagatgaatttatgccttgataaaa-caatacaactatgtgtgtgtca |
347 |
Q |
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| T |
9092984 |
aagattttcatatcaataggagatgnattaatg-cttgataaaaccaatacaacaaggtgtgggtca |
9092919 |
T |
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