View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15025_high_28 (Length: 367)
Name: NF15025_high_28
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15025_high_28 |
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| [»] scaffold0513 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 50832286 - 50832617
Alignment:
| Q |
18 |
agaaaagctggttcacagcttctaaaaagaggttacaacagtttcagataccaaaagttcagtaggggcattccctatccaagctttaaatcctacagtc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50832286 |
agaaaagctggttcacagcttctaaaaagaggttacaacagtttcagttaccaaaagttcagtaggggcattccctatccaagctttaaatcctacagtc |
50832385 |
T |
|
| Q |
118 |
ttagaaagaatggccatgtcacgtgcctctacattaaaacatcttttaacatggataattctagcaatagtaaaagagtttagcagctgcttacagtcta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
50832386 |
ttagaaagaatggccatgtcacgtgcctctacattaaaacatcttttaacatggataattctagcaatagtaaaagagtttagtagctgcttacagtcta |
50832485 |
T |
|
| Q |
218 |
gtataacagtgtcaattccagcactgaaactctttcctaagatgcagtttactacattctcagcatcagatgaaattatcaagcttcagatacctctttc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50832486 |
gtataacagtgtcaattccagcactgaaactctttcctaagatgcagtttactacattctcagcatcagatgaaattatcaagcttcagatacctctttc |
50832585 |
T |
|
| Q |
318 |
tagagcagattgcacattgcagaccccatcgc |
349 |
Q |
| |
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||||||||||||||||||||| |||||||||| |
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| T |
50832586 |
tagagcagattgcacattgcataccccatcgc |
50832617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 50843567 - 50843236
Alignment:
| Q |
18 |
agaaaagctggttcacagcttctaaaaagaggttacaacagtttcagataccaaaagttcagtaggggcattccctatccaagctttaaatcctacagtc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50843567 |
agaaaagctggttcacagcttctaaaaagaggttacaacagtttcagttaccaaaagttcagtaggggcattccctatccaagctttaaatcctacagtc |
50843468 |
T |
|
| Q |
118 |
ttagaaagaatggccatgtcacgtgcctctacattaaaacatcttttaacatggataattctagcaatagtaaaagagtttagcagctgcttacagtcta |
217 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
50843467 |
ttagaaagaatggccatgtcacgtgcctctacattaaaacatcttttaacatggataattctagcaatagtaaaagagtttagtagctgcttacagtcta |
50843368 |
T |
|
| Q |
218 |
gtataacagtgtcaattccagcactgaaactctttcctaagatgcagtttactacattctcagcatcagatgaaattatcaagcttcagatacctctttc |
317 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50843367 |
gtataacagtgtcaattccagcactgaaactctttcctaagatgcagtttactacattctcagcatcagatgaaattatcaagcttcagatacctctttc |
50843268 |
T |
|
| Q |
318 |
tagagcagattgcacattgcagaccccatcgc |
349 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |
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| T |
50843267 |
tagagcagattgcacattgcataccccatcgc |
50843236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 32791925 - 32792240
Alignment:
| Q |
18 |
agaaaagctggttcacagcttctaaaaagaggttacaacagtttcagataccaaaagttcagtaggggcattccctatccaagctttaaatcctacagtc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32791925 |
agaaaagctggttcacagcttctaaaaagaggttacaacagtt----------------cagtaggggcattccctatccaagctttaaatcctacagtc |
32792008 |
T |
|
| Q |
118 |
ttagaaagaatggccatgtcacgtgcctctacattaaaacatcttttaacatggataattctagcaatagtaaaagagtttagcagctgcttacagtcta |
217 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
32792009 |
ttagaaagaatggccatgtcatgtgcctctacattaaaacatctttttacatggataattctagcaatagtaaaagagtttagtagctatttacagtcta |
32792108 |
T |
|
| Q |
218 |
gtataacagtgtcaattccagcactgaaactctttcctaagatgcagtttactacattctcagcatcagatgaaattatcaagcttcagatacctctttc |
317 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
32792109 |
gtataacagtgtcaattccagcagtgaaactctttcctaagatgtagtttacttcattctcagcatcagatgcaattatcaagcttgagatacctctttc |
32792208 |
T |
|
| Q |
318 |
tagagcagattgcacattgcagaccccatcgc |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
32792209 |
tagagcagattgcacattgcagaccccatcgc |
32792240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 24534085 - 24534416
Alignment:
| Q |
18 |
agaaaagctggttcacagcttctaaaaagaggttacaacagtttcagataccaaaagttcagtaggggcattccctatccaagctttaaatcctacagtc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24534085 |
agaaaagctggttcacagcttctaaaaagaggttacaacagtttcagttaccaacagttcagtaggggcattccctatccaagctttaaatcctacagtc |
24534184 |
T |
|
| Q |
118 |
ttagaaagaatggccatgtcacgtgcctctacattaaaacatcttttaacatggataattctagcaatagtaaaagagtttagcagctgcttacagtcta |
217 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
24534185 |
ttagaaagaatagccatgtcatgtgcctctacattaaaacatctttttacatggataattctagcaatagtaaaagagtttagtagctgtttacagtcta |
24534284 |
T |
|
| Q |
218 |
gtataacagtgtcaattccagcactgaaactctttcctaagatgcagtttactacattctcagcatcagatgaaattatcaagcttcagatacctctttc |
317 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
24534285 |
gtataacagtgtcaattccagcagtgaaactctttcctaagatgcagtttacttaattctcagcatcagatgcaattatcaagcttgagatacctctttc |
24534384 |
T |
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| Q |
318 |
tagagcagattgcacattgcagaccccatcgc |
349 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |
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| T |
24534385 |
tagagcaaattgcacattgcagaccccatcgc |
24534416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0513 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0513
Description:
Target: scaffold0513; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 254 - 331
Target Start/End: Complemental strand, 7682 - 7605
Alignment:
| Q |
254 |
ctaagatgcagtttactacattctcagcatcagatgaaattatcaagcttcagatacctctttctagagcagattgca |
331 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
7682 |
ctaagatgcagattgctacattctcagcatcagatgcaataatcaagcttgagatacctctttctagagcagattgca |
7605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 284
Target Start/End: Original strand, 17720996 - 17721051
Alignment:
| Q |
229 |
tcaattccagcactgaaactctttcctaagatgcagtttactacattctcagcatc |
284 |
Q |
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||||| ||| || |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17720996 |
tcaatcccaacagtgaaactctttcctaagatgcagtttactacattctcaacatc |
17721051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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