View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15025_high_29 (Length: 360)

Name: NF15025_high_29
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15025_high_29
NF15025_high_29
[»] chr3 (15 HSPs)
chr3 (142-308)||(23004772-23004939)
chr3 (148-306)||(40725869-40726029)
chr3 (142-308)||(46135543-46135709)
chr3 (142-223)||(33288148-33288229)
chr3 (142-283)||(8330616-8330758)
chr3 (156-228)||(39947237-39947309)
chr3 (142-304)||(12224006-12224169)
chr3 (142-191)||(8496722-8496771)
chr3 (142-191)||(9271126-9271175)
chr3 (142-191)||(38247814-38247863)
chr3 (142-191)||(48034926-48034975)
chr3 (142-191)||(50989219-50989268)
chr3 (142-191)||(51092351-51092400)
chr3 (242-306)||(44092433-44092497)
chr3 (142-306)||(36674519-36674685)
[»] chr6 (8 HSPs)
chr6 (147-307)||(23915993-23916145)
chr6 (142-308)||(9045849-9046016)
chr6 (148-307)||(12748233-12748395)
chr6 (147-192)||(29429605-29429650)
chr6 (142-306)||(34792651-34792817)
chr6 (147-218)||(9521905-9521978)
chr6 (142-191)||(14314103-14314152)
chr6 (243-306)||(16718116-16718179)
[»] chr5 (11 HSPs)
chr5 (142-307)||(15285345-15285502)
chr5 (142-303)||(35906010-35906163)
chr5 (147-307)||(12248294-12248456)
chr5 (142-306)||(43100208-43100374)
chr5 (142-308)||(13988263-13988431)
chr5 (142-308)||(36890393-36890560)
chr5 (157-203)||(6043035-6043081)
chr5 (242-307)||(11247311-11247375)
chr5 (243-307)||(8076374-8076438)
chr5 (144-232)||(33687665-33687753)
chr5 (148-202)||(1447853-1447907)
[»] chr1 (25 HSPs)
chr1 (142-307)||(526908-527065)
chr1 (142-306)||(46845666-46845822)
chr1 (142-307)||(39858363-39858520)
chr1 (142-308)||(13276472-13276630)
chr1 (142-305)||(29731204-29731369)
chr1 (157-308)||(40314123-40314266)
chr1 (142-216)||(26040986-26041060)
chr1 (142-307)||(2402924-2403091)
chr1 (162-308)||(47571561-47571709)
chr1 (148-228)||(33502604-33502684)
chr1 (142-307)||(1994969-1995135)
chr1 (142-223)||(29637295-29637376)
chr1 (147-305)||(48489470-48489630)
chr1 (244-307)||(49430483-49430546)
chr1 (142-223)||(15225076-15225157)
chr1 (242-313)||(15066013-15066084)
chr1 (148-212)||(6487750-6487814)
chr1 (142-185)||(1673385-1673428)
chr1 (142-205)||(19989255-19989318)
chr1 (142-191)||(7178228-7178277)
chr1 (142-308)||(27325625-27325794)
chr1 (148-223)||(40294816-40294891)
chr1 (142-185)||(44797589-44797632)
chr1 (242-308)||(40030905-40030970)
chr1 (142-228)||(49430544-49430630)
[»] chr2 (19 HSPs)
chr2 (142-306)||(3121626-3121782)
chr2 (153-308)||(33300006-33300155)
chr2 (142-303)||(24475714-24475867)
chr2 (142-308)||(40216425-40216593)
chr2 (142-306)||(17823595-17823761)
chr2 (93-141)||(27646627-27646675)
chr2 (142-306)||(13696965-13697131)
chr2 (142-306)||(36272661-36272827)
chr2 (142-307)||(36709191-36709357)
chr2 (244-307)||(14945735-14945798)
chr2 (142-216)||(25333160-25333234)
chr2 (153-223)||(42061316-42061386)
chr2 (142-214)||(14945830-14945902)
chr2 (242-308)||(32599246-32599311)
chr2 (243-308)||(14242522-14242586)
chr2 (142-191)||(40095279-40095328)
chr2 (269-306)||(4434592-4434629)
chr2 (142-191)||(14242632-14242681)
chr2 (242-307)||(33555361-33555425)
[»] chr8 (18 HSPs)
chr8 (142-306)||(28898011-28898167)
chr8 (142-306)||(11904869-11905035)
chr8 (142-295)||(2599547-2599692)
chr8 (142-212)||(41075693-41075763)
chr8 (142-212)||(31774740-31774810)
chr8 (144-245)||(10391368-10391469)
chr8 (142-307)||(35200572-35200739)
chr8 (142-207)||(8368472-8368537)
chr8 (148-228)||(27497194-27497274)
chr8 (142-192)||(16465728-16465778)
chr8 (160-232)||(10592010-10592082)
chr8 (142-218)||(45413628-45413704)
chr8 (248-307)||(45413554-45413613)
chr8 (242-308)||(14342185-14342250)
chr8 (142-193)||(12142097-12142148)
chr8 (142-191)||(1993757-1993806)
chr8 (142-191)||(43066021-43066070)
chr8 (157-206)||(45502693-45502742)
[»] chr4 (23 HSPs)
chr4 (157-307)||(50498241-50498383)
chr4 (142-217)||(5817471-5817546)
chr4 (147-307)||(22364470-22364622)
chr4 (142-233)||(51579336-51579427)
chr4 (142-302)||(32290230-32290377)
chr4 (147-223)||(41277236-41277312)
chr4 (142-306)||(45995895-45996060)
chr4 (142-308)||(42179147-42179303)
chr4 (142-216)||(24059225-24059299)
chr4 (144-307)||(25783908-25784072)
chr4 (142-312)||(55281224-55281396)
chr4 (148-306)||(48525348-48525508)
chr4 (142-203)||(51579596-51579657)
chr4 (142-306)||(37605691-37605857)
chr4 (142-308)||(17044019-17044186)
chr4 (142-306)||(25164471-25164637)
chr4 (153-216)||(36851254-36851317)
chr4 (220-307)||(14786735-14786824)
chr4 (142-191)||(3287100-3287149)
chr4 (243-307)||(14149959-14150023)
chr4 (142-205)||(20107126-20107190)
chr4 (142-191)||(43749108-43749157)
chr4 (142-218)||(26719991-26720067)
[»] chr7 (16 HSPs)
chr7 (142-228)||(42974458-42974544)
chr7 (142-307)||(31741059-31741216)
chr7 (142-307)||(38349458-38349625)
chr7 (144-304)||(37536317-37536479)
chr7 (142-232)||(11752613-11752703)
chr7 (142-308)||(28713693-28713861)
chr7 (242-307)||(43359090-43359155)
chr7 (142-307)||(46576241-46576408)
chr7 (142-279)||(47480041-47480178)
chr7 (241-305)||(36675939-36676003)
chr7 (142-233)||(38754971-38755061)
chr7 (242-284)||(6220185-6220227)
chr7 (242-308)||(33496618-33496683)
chr7 (242-307)||(30922709-30922773)
chr7 (142-191)||(33496515-33496564)
chr7 (142-191)||(48460675-48460724)
[»] scaffold0933 (1 HSPs)
scaffold0933 (142-191)||(3170-3219)
[»] scaffold0005 (1 HSPs)
scaffold0005 (220-307)||(52906-52995)


Alignment Details
Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 142 - 308
Target Start/End: Original strand, 23004772 - 23004939
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatac--t 239  Q
    |||| ||||| |||||||||||||||||||||||||| ||||||||||||| | |||||||||||| |||||||| | ||||||||| || ||| ||  |    
T  23004772 accaccttaggtggcatgtaccacttgtacacccacacacaattgtgacatgtattcatgtggtccccacacacata-aaaactcacattcacacacttt 23004870  T
Q  240 ctcacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatccta 308  Q
    | ||||||||||||||| |||| | ||||||||||||||||||||  ||||||||||||||||||||||    
T  23004871 cacacactctcacatggaagtggtgcatagtgtgtatggagaaaagggtgttcatgaaacattatccta 23004939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 148 - 306
Target Start/End: Original strand, 40725869 - 40726029
Alignment:
Q  148 ttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactctcacac- 246  Q
    |||| ||| |||||||||||||||| ||| |||||||||| |||| |||| || |||||| || | ||| | |||| |||| || | | ||||||||||     
T  40725869 ttaggtggtatgtaccacttgtacatccatatacaattgttacatgtgtttatatggtccccaaatacaaaaaaaaatcacattcatacactctcacaca 40725968  T
Q  247 -tctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcc 306  Q
     |||||||| |||||||||||||||||||||| | |||| ||||| |||||||||||||||    
T  40725969 ttctcacataggagtgatacatagtgtgtatgaaaaaaaatgtgtccatgaaacattatcc 40726029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 142 - 308
Target Start/End: Original strand, 46135543 - 46135709
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacata-ctc 240  Q
    ||||||||| |||||||||| || ||||||||| ||||||||||||||||| ||| |   |||| | || | ||||| ||||||||  |||| ||  |||    
T  46135543 accatcttaaatggcatgtatcatttgtacacctacatacaattgtgacatgtgtccgcatggttcccatatacacaaaaaactcat-tttatatctctc 46135641  T
Q  241 tcacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatccta 308  Q
     ||||||||||||| || ||| ||||  |||||||||||||||||  |||||||||||||||||||||    
T  46135642 acacactctcacataggggtggtacaatgtgtgtatggagaaaatgatgttcatgaaacattatccta 46135709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 33288148 - 33288229
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaa 223  Q
    |||| ||||| ||| |||||||||||||||||||||| |||||||||| || |||  |||||||||||||||||||| ||||    
T  33288148 accaccttaggtggtatgtaccacttgtacacccacacacaattgtgatatgtgtctatgtggtcctcacacacacaaaaaa 33288229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 283
Target Start/End: Complemental strand, 8330758 - 8330616
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactct 241  Q
    |||| ||||||||||||||||||||||||||  |||| |||||||||| |||||| |||||||||| || |  |||| ||||||||| ||||    || |    
T  8330758 accaccttagatggcatgtaccacttgtacattcacacacaattgtgatatatgtccatgtggtccccatatgcacaaaaaactcacatttattatcttt 8330659  T
Q  242 c--acactctcacatgggagtgatacatagtgtgtatggagaaa 283  Q
    |  ||||||||||||||| |||||||| | ||||||| ||||||    
T  8330658 catacactctcacatggg-gtgatacaaaatgtgtatagagaaa 8330616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 39947309 - 39947237
Alignment:
Q  156 catgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcac 228  Q
    |||||||||||| ||||||||||||||||||||| || ||| |||||| || ||||||||  | |||||||||    
T  39947309 catgtaccacttatacacccacatacaattgtgatatgtgtccatgtgatcttcacacaccaaaaaaactcac 39947237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 304
Target Start/End: Complemental strand, 12224169 - 12224006
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacac-ataaaactcacctttacatactc 240  Q
    |||| ||||| |||||||||||| ||||||||||||| |||||| |||||  ||| | |||||||| | ||||||| | ||||||||| | ||    |||    
T  12224169 accaccttaggtggcatgtaccatttgtacacccacacacaattttgacaagtgtccttgtggtcccctcacacacaagaaaactcacatgtattgtctc 12224070  T
Q  241 t--cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattat 304  Q
    |  ||||||||||| | | |||| |||| |||||||||||| |||| ||||| |||||||||||||    
T  12224069 tcacacactctcacct-gaagtggtaca-agtgtgtatggaaaaaagtgtgtacatgaaacattat 12224006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 8496722 - 8496771
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgaca 191  Q
    |||| ||||| ||||||||||||||||| ||||||||||||||| |||||    
T  8496722 accaccttaggtggcatgtaccacttgtccacccacatacaattttgaca 8496771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 9271126 - 9271175
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgaca 191  Q
    |||| |||||||||||||||||||||||||||||||| | |||| |||||    
T  9271126 accaccttagatggcatgtaccacttgtacacccacacataattttgaca 9271175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 38247814 - 38247863
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgaca 191  Q
    |||| ||||| |||||||||||||||||||||||||| |||||| |||||    
T  38247814 accaccttaggtggcatgtaccacttgtacacccacacacaattttgaca 38247863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 48034975 - 48034926
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgaca 191  Q
    |||| ||||| || |||||||||||||||||||||||||||||| |||||    
T  48034975 accaccttaggtgacatgtaccacttgtacacccacatacaattttgaca 48034926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 50989219 - 50989268
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgaca 191  Q
    |||| ||||| |||||||||||||||||||||||||| |||||| |||||    
T  50989219 accaccttaggtggcatgtaccacttgtacacccacacacaattttgaca 50989268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 51092351 - 51092400
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgaca 191  Q
    |||| ||||| |||||||||||||||||||||||||| |||||| |||||    
T  51092351 accaccttaggtggcatgtaccacttgtacacccacacacaattttgaca 51092400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 44092497 - 44092433
Alignment:
Q  242 cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcc 306  Q
    |||||||| ||||| ||||| |||||||| ||||  |||||||  ||||||||||||||||||||    
T  44092497 cacactcttacatgagagtggtacatagtttgtagagagaaaagggtgttcatgaaacattatcc 44092433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 306
Target Start/End: Complemental strand, 36674685 - 36674519
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactct 241  Q
    |||| ||||| || ||| |||||||||||||| |||||| ||||||||||| ||| |||||| ||   ||||||| |  ||||||| ||||     ||||    
T  36674685 accaccttaggtgacatataccacttgtacactcacatataattgtgacatgtgtccatgtgatcactacacacataagaaactcatcttttatgtctct 36674586  T
Q  242 c--acactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcc 306  Q
    |  ||||||||| |||| |||| ||||  |||||||| |||||||   |||||||||||||| ||||    
T  36674585 caaacactctcatatggaagtggtacaatgtgtgtatagagaaaaggatgttcatgaaacataatcc 36674519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 147 - 307
Target Start/End: Original strand, 23915993 - 23916145
Alignment:
Q  147 cttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactctcacac 246  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||| ||| |||||||||| |||| |||||  ||||||||        | || |||||    
T  23915993 cttagatggcatgtaccacttatacacccatacacaattgtgacatgtgtccatgtggtccccacatacacaagaaactcac--------attcacacac 23916084  T
Q  247 tctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcct 307  Q
    ||||||||||||||| ||||||||||||||| ||||||  |||||||||||||||||||||    
T  23916085 tctcacatgggagtggtacatagtgtgtatgcagaaaagggtgttcatgaaacattatcct 23916145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 142 - 308
Target Start/End: Original strand, 9045849 - 9046016
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcct-cacacacacataaaactcacctttacatactc 240  Q
    |||| ||||| ||||||||| |||||||||||||||| |||||| |||||  ||||| ||||||||| |||||||||| |||||| || | ||    |||    
T  9045849 accaccttaggtggcatgtatcacttgtacacccacacacaattttgacaagtgttcttgtggtcctccacacacaca-aaaacttacatgtattgtctc 9045947  T
Q  241 t--cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatccta 308  Q
    |  ||||||||||||| |||||| ||||  ||||||||| | |||| ||||| |||||||||||||||||    
T  9045948 tcacacactctcacat-ggagtggtacaatgtgtgtatgaaaaaaagtgtgtacatgaaacattatccta 9046016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 307
Target Start/End: Original strand, 12748233 - 12748395
Alignment:
Q  148 ttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtgg-tcct-cacacacacataaaactcacctttacatactctc--a 243  Q
    |||| |||||| ||||||||||||||||||||| ||||||||||| ||| ||||||| |||| |||||||||| |||| ||| ||||     |||||  |    
T  12748233 ttaggtggcatataccacttgtacacccacatataattgtgacatctgtccatgtggttcctacacacacaca-aaaaatcatcttttgtgtctctcaaa 12748331  T
Q  244 cactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcct 307  Q
    ||||||||||||| |||| ||||  ||||||||  ||||||  ||||| |||||||||||||||    
T  12748332 cactctcacatggaagtggtacaatgtgtgtataaagaaaagggtgtttatgaaacattatcct 12748395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 29429605 - 29429650
Alignment:
Q  147 cttagatggcatgtaccacttgtacacccacatacaattgtgacat 192  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  29429605 cttaggtggcatgtaccacttgtacacccacatacaattgtgacat 29429650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 142 - 306
Target Start/End: Complemental strand, 34792817 - 34792651
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtc-ctc-acacacacataaaactcacctttacatact 239  Q
    |||| ||||| |||||||||||||||||||||||||||| |||| |||||  ||| | ||||||| ||| ||||||||| ||||||||| | ||    ||    
T  34792817 accaccttaggtggcatgtaccacttgtacacccacatataattttgacaagtgtccttgtggtctctctacacacaca-aaaactcacatgtattgtct 34792719  T
Q  240 ct--cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcc 306  Q
    ||  ||||||||||||| |||||| ||||  ||||||||| | |||| ||||| |||||||||||||||    
T  34792718 ctcacacactctcacat-ggagtggtacaatgtgtgtatgcaaaaaagtgtgtacatgaaacattatcc 34792651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 147 - 218
Target Start/End: Complemental strand, 9521978 - 9521905
Alignment:
Q  147 cttagatggcatgtaccacttgtacacccacatac--aattgtgacatatgttcatgtggtcctcacacacaca 218  Q
    ||||| |||||||||||||||||||||||||| ||  ||||||||||||| |||||||| ||| |||| |||||    
T  9521978 cttaggtggcatgtaccacttgtacacccacacacataattgtgacatatattcatgtgatccccacatacaca 9521905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 14314152 - 14314103
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgaca 191  Q
    |||| ||||| |||||||||||||||||||||||||| |||||| |||||    
T  14314152 accaccttaggtggcatgtaccacttgtacacccacacacaattttgaca 14314103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 16718116 - 16718179
Alignment:
Q  243 acactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcc 306  Q
    ||||| |||||||| |||| ||||  |||||||| |||||||  ||||||||||||||||||||    
T  16718116 acactatcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcc 16718179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 142 - 307
Target Start/End: Original strand, 15285345 - 15285502
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactct 241  Q
    |||| ||||||||||||||||||||| ||||| || | ||||||||||||| ||| |||||||||| |||| |||||  |||||||| || |||          
T  15285345 accaccttagatggcatgtaccacttatacactcatacacaattgtgacatgtgtccatgtggtccccacatacacaagaaactcacattcaca------ 15285438  T
Q  242 cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcct 307  Q
      |||||||||||||||||| ||||||||||||||| ||||||  |||||||||||||||||||||    
T  15285439 --cactctcacatgggagtggtacatagtgtgtatgcagaaaagggtgttcatgaaacattatcct 15285502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 142 - 303
Target Start/End: Original strand, 35906010 - 35906163
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactct 241  Q
    |||| ||||| ||| ||||| ||||| |||||||| ||||||||||||||| ||| ||||| ||||  |||||||||  |||||||| ||||            
T  35906010 accaccttaggtggtatgtatcacttatacacccatatacaattgtgacatgtgtccatgtagtccctacacacacaagaaactcactttta-------- 35906101  T
Q  242 cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacatta 303  Q
    |||||||||||||| ||||| |||||||| |||||||||||||  |||||||||||||||||    
T  35906102 cacactctcacatgagagtggtacatagtatgtatggagaaaagggtgttcatgaaacatta 35906163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 147 - 307
Target Start/End: Original strand, 12248294 - 12248456
Alignment:
Q  147 cttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactctc--ac 244  Q
    ||||| |||||| ||||||||||||| ||||||| ||||||||||| ||| ||||||||||  |||| ||||  ||||||| ||||     |||||  ||    
T  12248294 cttaggtggcatataccacttgtacatccacatataattgtgacatgtgtccatgtggtccctacacgcacaagaaactcatcttttgtgtctctcaaac 12248393  T
Q  245 actctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcct 307  Q
    ||| |||||||| |||| ||||  |||||||| |||||||  |||||||||||||||||||||    
T  12248394 actatcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcct 12248456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 306
Target Start/End: Complemental strand, 43100374 - 43100208
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactct 241  Q
    |||||||||| ||| || ||||||||||||||||||||| ||||||||||| ||| |||||||||   |||||||||  ||| ||| ||||     ||||    
T  43100374 accatcttaggtggtatataccacttgtacacccacatataattgtgacatgtgtccatgtggtctctacacacacaagaaattcatcttttgtgtctct 43100275  T
Q  242 c--acactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcc 306  Q
    |  ||||| |||||||  |||| ||||  |||||||| |||||||  ||||||||||||||||||||    
T  43100274 caaacactatcacatgaaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcc 43100208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 142 - 308
Target Start/End: Original strand, 13988263 - 13988431
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacac-ataaaactcacctttacatactc 240  Q
    |||| ||||| |||||||||||||||||||||||||| |||||| |||||  ||| | |||||||| | ||||||| | |||| |||| | ||    |||    
T  13988263 accaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtccccccacacacaaaaaaagtcacatgtattgtctc 13988362  T
Q  241 t--cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatccta 308  Q
    |  ||||||||||||| |||||| ||||  ||||||||||| |||| ||||| |||||||||||||||||    
T  13988363 tcacacactctcacat-ggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatccta 13988431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 308
Target Start/End: Original strand, 36890393 - 36890560
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggt-cctcacacacacataaaactcacctttacatactc 240  Q
    |||| ||||| |||||||||||||||||||||||||| |||||| |||||  ||| | |||||| || |||||||| | ||||||||| | ||    |||    
T  36890393 accaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtcccccacacaca-aaaaaactcacatgtattgtctc 36890491  T
Q  241 tc--acactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatccta 308  Q
    ||  ||||||||||||  ||||| ||||  ||||||||||| |||| ||||| |||||||||||||||||    
T  36890492 tcatacactctcacat-cgagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatccta 36890560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 6043035 - 6043081
Alignment:
Q  157 atgtaccacttgtacacccacatacaattgtgacatatgttcatgtg 203  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||    
T  6043035 atgtaccacttgtacacccatatataattgtgacatatgttcatgtg 6043081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 11247311 - 11247375
Alignment:
Q  242 cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcct 307  Q
    ||||||||||||||| |||| ||||  ||||||||||| |||| ||||| ||||||||||||||||    
T  11247311 cacactctcacatgg-agtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 11247375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 8076374 - 8076438
Alignment:
Q  243 acactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcct 307  Q
    |||||||||||||| |||| ||||  || ||||| |||||||  |||||||||||||||||||||    
T  8076374 acactctcacatggaagtggtacaatgtatgtatagagaaaagggtgttcatgaaacattatcct 8076438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 33687665 - 33687753
Alignment:
Q  144 catcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcaccttt 232  Q
    |||||||| |||||| ||||||||||||| ||| ||| ||||||||||| ||| |||||| ||   |||||||||  ||||||| ||||    
T  33687665 catcttaggtggcatataccacttgtacatccatatataattgtgacatgtgtccatgtgatctctacacacacaagaaactcatcttt 33687753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 1447907 - 1447853
Alignment:
Q  148 ttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgt 202  Q
    |||| ||||||||||||||| |||| ||||  ||||||||||||||||| |||||    
T  1447907 ttaggtggcatgtaccacttatacatccacgcacaattgtgacatatgtccatgt 1447853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 142 - 307
Target Start/End: Complemental strand, 527065 - 526908
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactct 241  Q
    |||| ||||| ||||||||||||||| |||||||| | ||||||||||||| ||| |||||||||| |||| |||||  |||||||| || |||          
T  527065 accaccttaggtggcatgtaccacttatacacccatacacaattgtgacatgtgtccatgtggtccccacatacacaagaaactcacattcaca------ 526972  T
Q  242 cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcct 307  Q
      ||||||||||||| |||| ||||||||||||||||||||||  |||||||||||||||||||||    
T  526971 --cactctcacatggaagtggtacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 526908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 142 - 306
Target Start/End: Complemental strand, 46845822 - 46845666
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactct 241  Q
    |||| ||||||||||||||||||||| |||||||| | ||||||||||||| ||| |||||||||| |||| |||||  ||||||||        | ||     
T  46845822 accaccttagatggcatgtaccacttatacacccatacacaattgtgacatgtgtccatgtggtccccacatacacaagaaactcac--------attca 46845731  T
Q  242 cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcc 306  Q
    |||||||||||||||||||| |||||| |||||||| ||||||  ||||||||||||||||||||    
T  46845730 cacactctcacatgggagtggtacataatgtgtatgcagaaaagggtgttcatgaaacattatcc 46845666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 142 - 307
Target Start/End: Original strand, 39858363 - 39858520
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactct 241  Q
    |||| ||||| |||||| |||||||| |||||||| | ||||||||||||| ||| |||||||||| ||||||||||  |||||||| || |||          
T  39858363 accaccttaggtggcatataccacttatacacccatacacaattgtgacatgtgtccatgtggtccccacacacacaagaaactcactttcaca------ 39858456  T
Q  242 cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcct 307  Q
      | |||||| ||||||||| ||||||||||||||||||||||  |||||||||||||||||||||    
T  39858457 --ctctctcatatgggagtggtacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 39858520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 142 - 308
Target Start/End: Complemental strand, 13276630 - 13276472
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactct 241  Q
    |||| ||||| ||| ||||||||||| ||||| || | |||||| |||||| ||| |||||||| | ||||||||||  |||||||| || |||          
T  13276630 accaccttaggtggtatgtaccacttatacactcatacacaattatgacatgtgtccatgtggtacccacacacacaagaaactcactttcaca------ 13276537  T
Q  242 cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatccta 308  Q
      |||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||    
T  13276536 --cactctcacatgggagtggtacatagtgtgtatggagaaaagggtgttcatgaaacattatccta 13276472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 142 - 305
Target Start/End: Original strand, 29731204 - 29731369
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactct 241  Q
    |||| ||||| |||||| ||||||| ||||||||||||| ||||||||||| ||| ||||||||||  |||||||||  ||| ||| ||||     ||||    
T  29731204 accaccttaggtggcatataccactagtacacccacatataattgtgacatgtgtccatgtggtccctacacacacaagaaattcatcttttgtgtctct 29731303  T
Q  242 c--acactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatc 305  Q
    |  |||||||||||||| |||||||||  |||||||| |||||||  |||||||||||||||||||    
T  29731304 caaacactctcacatggaagtgatacaatgtgtgtatagagaaaagggtgttcatgaaacattatc 29731369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 157 - 308
Target Start/End: Original strand, 40314123 - 40314266
Alignment:
Q  157 atgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactctcacactctcacatgg 256  Q
    |||||||| || |||| ||| | ||||||||||||| ||| |||||||||| |||||||||| ||||||||| || |||        |||||||| ||||    
T  40314123 atgtaccatttatacatccatacacaattgtgacatgtgtccatgtggtccccacacacacaaaaaactcacattcaca--------cactctcatatgg 40314214  T
Q  257 gagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatccta 308  Q
    ||||| || ||||| |||||||| ||||| ||||||||||||||||||||||    
T  40314215 gagtggtatatagtatgtatggaaaaaatggtgttcatgaaacattatccta 40314266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 26040986 - 26041060
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacaca 216  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| || ||||||| ||||||||    
T  26040986 accaccttaggtggcatgtaccacttgtacacccacatacaattgtgacatgtgtccacgtggtccccacacaca 26041060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 307
Target Start/End: Complemental strand, 2403091 - 2402924
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacac-acataaaactcacctttacatactc 240  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||| |  ||||| |||||||| | ||||| | | ||||||||| | ||    |||    
T  2403091 accatcttagatggcatgtaccacttgtacacccacacacaattttgaaaagtgttcttgtggtccccccacacaaaaaaaaactcacatgtattgtctc 2402992  T
Q  241 t--cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcct 307  Q
    |  ||||||||||||| ||| || ||||  ||||||||||| |||| ||||| ||||||||||||||||    
T  2402991 tcgcacactctcacat-ggaatggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 2402924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 308
Target Start/End: Complemental strand, 47571709 - 47571561
Alignment:
Q  162 ccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactctc--acactctcacatgggag 259  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||||||  ||||||| |  ||||||| ||||     |||||  |||||||||||||| ||    
T  47571709 ccacttgtacacccacatataattgtgacatgtgtccatgtggtccctacacacataagaaactcatcttttgtgtctctcaaacactctcacatggaag 47571610  T
Q  260 tgatacatagtgtgtatggagaaaattgtgttcatgaaacattatccta 308  Q
    || ||||  |||||||| ||| |||  ||||||||||||||||||||||    
T  47571609 tggtacaatgtgtgtatagaggaaagggtgttcatgaaacattatccta 47571561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 33502684 - 33502604
Alignment:
Q  148 ttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcac 228  Q
    ||||||| ||||||||||||||||||| |||| |||||||||||||||||||  |||||  |||||||||| |||||||||    
T  33502684 ttagatgacatgtaccacttgtacacctacatgcaattgtgacatatgttcacatggtctccacacacacaaaaaactcac 33502604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 142 - 307
Target Start/End: Original strand, 1994969 - 1995135
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcct-cacacacacataaaactcacctttacatactc 240  Q
    |||| ||||| |||||||||||||||||||||||||| |||||| |||||  |||   ||||||||| |||||||| | ||||||||| | ||    |||    
T  1994969 accaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtctttgtggtcctccacacaca-aaaaaactcacatgtattgtctc 1995067  T
Q  241 t--cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcct 307  Q
    |  ||||||||||||| |||||| ||||  ||||||||||| |||| ||||| ||||||||||||||||    
T  1995068 tcacacactctcacat-ggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 1995135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 29637376 - 29637295
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaa 223  Q
    |||||||||| |||||||||||||||||||||||||| |||||| |||||  ||| | |||||||||| |||||||| ||||    
T  29637376 accatcttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtcctcccacacacaaaaaa 29637295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 147 - 305
Target Start/End: Original strand, 48489470 - 48489630
Alignment:
Q  147 cttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactctc--ac 244  Q
    ||||| |||||| ||||||||||||| ||| ||| ||||||||||| ||| ||||||||||  || ||||||  ||||||| ||||     |||||  ||    
T  48489470 cttaggtggcatataccacttgtacatccatatataattgtgacatctgtccatgtggtccctacgcacacaagaaactcatcttttgtgtctctcaaac 48489569  T
Q  245 actctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatc 305  Q
    ||| |||||||| |||| ||||  || ||||| |||||||| |||||||||||||||||||    
T  48489570 actatcacatggaagtggtacaatgtatgtatagagaaaatggtgttcatgaaacattatc 48489630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 49430546 - 49430483
Alignment:
Q  244 cactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcct 307  Q
    |||| ||||||||||||| ||||||||||||||||||||||  |||||||||||| ||||||||    
T  49430546 cactttcacatgggagtggtacatagtgtgtatggagaaaagagtgttcatgaaatattatcct 49430483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 15225157 - 15225076
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaa 223  Q
    |||| ||||| |||||||||| |||| ||||||||||| |||||||||||||||| ||  |||||| |||||||||| ||||    
T  15225157 accaccttaggtggcatgtacaacttatacacccacatgcaattgtgacatatgtccacatggtccccacacacacacaaaa 15225076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 313
Target Start/End: Complemental strand, 15066084 - 15066013
Alignment:
Q  242 cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcctagatat 313  Q
    |||||||||||||| ||||| ||||| || |||||||| ||||  |||||||||||||||||||||| ||||    
T  15066084 cacactctcacatgagagtggtacattgtatgtatggaaaaaagagtgttcatgaaacattatcctatatat 15066013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 6487750 - 6487814
Alignment:
Q  148 ttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcaca 212  Q
    |||| |||||||||||||||||||| ||||| ||||||||||||| ||| || ||||||| ||||    
T  6487750 ttaggtggcatgtaccacttgtacatccacacacaattgtgacatgtgtccacgtggtccccaca 6487814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 1673385 - 1673428
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaatt 185  Q
    |||||||||| |||||||||||||||||||||||||| ||||||    
T  1673385 accatcttaggtggcatgtaccacttgtacacccacacacaatt 1673428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 19989255 - 19989318
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggt 205  Q
    |||| |||||||| ||| ||||||||||||| |||||||||| |||||||| ||| ||||||||    
T  19989255 accaccttagatgacatataccacttgtacatccacatacaagtgtgacatgtgtccatgtggt 19989318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 7178277 - 7178228
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgaca 191  Q
    |||| ||||| || ||||||||| ||||||||||||||||||||||||||    
T  7178277 accaccttaggtgacatgtaccatttgtacacccacatacaattgtgaca 7178228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 308
Target Start/End: Complemental strand, 27325794 - 27325625
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacac-ataaaactcacctttacatactc 240  Q
    |||| ||||| |||||||||||||||||||||||||| |||||| ||| |  ||| | |||||| | | ||||||| | |||| |||| | ||    |||    
T  27325794 accaccttaggtggcatgtaccacttgtacacccacacacaattttgataagtgtccttgtggttcccccacacacaaaaaaagtcacatgtattgtctc 27325695  T
Q  241 tcacactc---tcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatccta 308  Q
    |||||| |   |||||| |||||| ||||  ||||||||||| |||| ||||| |||||||||||||||||    
T  27325694 tcacacactcttcacat-ggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatccta 27325625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 40294891 - 40294816
Alignment:
Q  148 ttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaa 223  Q
    |||| ||||| ||||||||||| |||| | | ||||||||||||| | |  |||||||||||||||||||| ||||    
T  40294891 ttaggtggcacgtaccacttgtccacctatacacaattgtgacatgtatctatgtggtcctcacacacacaaaaaa 40294816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 44797632 - 44797589
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaatt 185  Q
    |||| ||||| |||||||||||||||||||||||||| ||||||    
T  44797632 accaccttaggtggcatgtaccacttgtacacccacacacaatt 44797589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 40030905 - 40030970
Alignment:
Q  242 cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatccta 308  Q
    ||||||||||||||| |||| ||||  ||||||||| | |||| ||||| |||||||||||||||||    
T  40030905 cacactctcacatgg-agtggtacaatgtgtgtatgaaaaaaagtgtgtacatgaaacattatccta 40030970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 49430630 - 49430544
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcac 228  Q
    |||| ||||| ||||||||||||||| |||| | | | ||||||||||||| ||| ||| |||||  ||||||||||  ||||||||    
T  49430630 accaccttaggtggcatgtaccacttatacatcaatacacaattgtgacatgtgtccatctggtctccacacacacaagaaactcac 49430544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 142 - 306
Target Start/End: Original strand, 3121626 - 3121782
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactct 241  Q
    |||| ||||||||||||||||||||| ||||| || | ||||||||||||| ||| |||||||||| |||| |||||  |||||||| || |||          
T  3121626 accaccttagatggcatgtaccacttatacactcatacacaattgtgacatgtgtccatgtggtccccacatacacaagaaactcacattcaca------ 3121719  T
Q  242 cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcc 306  Q
      |||||||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||    
T  3121720 --cactctcacatgggagtggtacatagtgtgtatgcagaaaagggtgttcatgaaacattatcc 3121782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 153 - 308
Target Start/End: Original strand, 33300006 - 33300155
Alignment:
Q  153 tggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacata--aaactcacctttacatactctcacactctc 250  Q
    |||||||||||| || |||||||| ||||||||||||||| |||||||||||||| |||||||||| |  |||||||| |        || |||||||||    
T  33300006 tggcatgtaccatttatacacccatatacaattgtgacatgtgttcatgtggtccccacacacacacaagaaactcactt--------tcacacactctc 33300097  T
Q  251 acatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatccta 308  Q
    ||||||||||| ||||||||||||||| |||| |  ||||||||||||||||||||||    
T  33300098 acatgggagtggtacatagtgtgtatgaagaatacggtgttcatgaaacattatccta 33300155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 142 - 303
Target Start/End: Complemental strand, 24475867 - 24475714
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactct 241  Q
    |||| ||||| ||| ||||| ||||| |||||||| | ||||||||||||| ||| ||||| |||| ||||||||||  |||||||| ||||            
T  24475867 accaccttaggtggtatgtatcacttatacacccatacacaattgtgacatgtgtccatgtagtccccacacacacaagaaactcactttta-------- 24475776  T
Q  242 cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacatta 303  Q
    ||||||||||| ||| |||| ||||||||||||||||||||||  |||||||||||||||||    
T  24475775 cacactctcacgtggaagtggtacatagtgtgtatggagaaaagggtgttcatgaaacatta 24475714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 142 - 308
Target Start/End: Original strand, 40216425 - 40216593
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactct 241  Q
    |||| ||||||||  || ||||||||||||||||||||| ||||||||||| ||| ||||||||||  ||||||| |  ||||||| ||||     ||||    
T  40216425 accaccttagatgatatataccacttgtacacccacatataattgtgacatgtgtccatgtggtccctacacacataagaaactcatcttttatgtctct 40216524  T
Q  242 c--acactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatccta 308  Q
    |  |||||||||||||| |||| ||||  |||||||| ||| |||  ||||||||||||||||||||||    
T  40216525 caaacactctcacatggaagtggtacaatgtgtgtatagaggaaagggtgttcatgaaacattatccta 40216593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 306
Target Start/End: Original strand, 17823595 - 17823761
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacac-ataaaactcacctttacatactc 240  Q
    |||| ||||||||| ||||| ||||||||||||||||||||||| ||| |  ||| | |||||||| | ||||||| | ||||||||| | ||    |||    
T  17823595 accaccttagatggtatgtatcacttgtacacccacatacaattttgataagtgtccttgtggtccccccacacacaaaaaaactcacatgtattgtctc 17823694  T
Q  241 t--cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcc 306  Q
    |  ||||||||||||| |||||| ||||  ||||||||||| |||| ||||| |||||||||||||||    
T  17823695 tcacacactctcacat-ggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 17823761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 27646627 - 27646675
Alignment:
Q  93 gaagtcaaagtaaggccttgatcagccaatgtctcaacaacttgatttt 141  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27646627 gaagtcaaagtaaggccttgatcagccaatgtctcagcaacttgatttt 27646675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 306
Target Start/End: Complemental strand, 13697131 - 13696965
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacac-ataaaactcacctttacatactc 240  Q
    |||| ||||| |||||||||||||||||||||||||| |||||| |||||  ||| | |||||| | | ||||||| | |||| |||| | ||    |||    
T  13697131 accaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggttcccccacacacaaaaaaagtcacatgtattgtctc 13697032  T
Q  241 t--cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcc 306  Q
    |  ||||||||||||| |||||| ||||  ||||||||||| |||| ||||| |||||||||||||||    
T  13697031 tcacacactctcacat-ggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 13696965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 306
Target Start/End: Complemental strand, 36272827 - 36272661
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacac-ataaaactcacctttacatac-- 238  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||| |||||  ||| | |||||||| ||||||||| | ||||||||| | ||    |      
T  36272827 accaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccccacacacacaaaaaaactcacatgtattgtctt 36272728  T
Q  239 tctcacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcc 306  Q
    || ||||||||||||| |||||| ||||  |||| |||||| |||| ||||| |||||||||||||||    
T  36272727 tcacacactctcacat-ggagtggtacaatgtgtatatggaaaaaagtgtgtacatgaaacattatcc 36272661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 307
Target Start/End: Complemental strand, 36709357 - 36709191
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactct 241  Q
    |||||||||| ||| ||||||||||| |||||||||| |||||| ||||| ||||   |||||||| | |||||||| ||||||||| | ||    || |    
T  36709357 accatcttaggtggtatgtaccacttatacacccacacacaattttgacaaatgtcattgtggtccccccacacacaaaaaactcacatgtattgtctgt 36709258  T
Q  242 cacac--tctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcct 307  Q
    |||||  ||||| || |||||| ||||  || |||||||| |||| ||||| ||||||||||||||||    
T  36709257 cacacattctcatat-ggagtggtacaatgtttgtatggaaaaaaatgtgtacatgaaacattatcct 36709191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 14945798 - 14945735
Alignment:
Q  244 cactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcct 307  Q
    ||||||||||| |||||| |||||| |||||||| ||||||  |||||||||||||||||||||    
T  14945798 cactctcacataggagtggtacataatgtgtatgaagaaaagggtgttcatgaaacattatcct 14945735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 25333160 - 25333234
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacaca 216  Q
    |||| ||| ||| |||||||||||||||||| | ||| ||| ||||||||| |||||||||| ||||||||||||    
T  25333160 accaccttggatcgcatgtaccacttgtacatcaacacacatttgtgacatgtgttcatgtgatcctcacacaca 25333234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 42061386 - 42061316
Alignment:
Q  153 tggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaa 223  Q
    ||||||||||||||||||||||||||||||||| |||||  ||| | |||||||| | |||||||| ||||    
T  42061386 tggcatgtaccacttgtacacccacatacaattttgacaagtgtccttgtggtccccccacacacacaaaa 42061316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 14945902 - 14945830
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacaca 214  Q
    |||| ||||| |||||||||||||||||||||||||| |||| ||| |||| |||| || |||||| ||||||    
T  14945902 accaccttaggtggcatgtaccacttgtacacccacacacaaatgtaacatgtgtttatttggtccccacaca 14945830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 32599311 - 32599246
Alignment:
Q  242 cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatccta 308  Q
    ||||||||||||||| |||| ||||  ||||||||||| |||| ||||| |||||||||||||||||    
T  32599311 cacactctcacatgg-agtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatccta 32599246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 14242586 - 14242522
Alignment:
Q  243 acactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatccta 308  Q
    |||||||||||||| |||| ||||  ||||||||||| |||| ||||| |||||||||||||||||    
T  14242586 acactctcacatgg-agtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatccta 14242522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 40095279 - 40095328
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgaca 191  Q
    |||| |||||||| ||||||||||||||||| |||||||||||| |||||    
T  40095279 accaccttagatgacatgtaccacttgtacatccacatacaattttgaca 40095328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 306
Target Start/End: Complemental strand, 4434629 - 4434592
Alignment:
Q  269 gtgtgtatggagaaaattgtgttcatgaaacattatcc 306  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  4434629 gtgtgtatggaaaaaatagtgttcatgaaacattatcc 4434592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 14242681 - 14242632
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgaca 191  Q
    |||||||||| ||| ||||||||| |||||||||||| |||||| |||||    
T  14242681 accatcttaggtggtatgtaccacctgtacacccacacacaattttgaca 14242632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 33555425 - 33555361
Alignment:
Q  242 cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcct 307  Q
    |||| |||||||||| |||| ||||  ||||||||||| |||| ||||| ||||||||||||||||    
T  33555425 cacattctcacatgg-agtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 33555361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 142 - 306
Target Start/End: Original strand, 28898011 - 28898167
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactct 241  Q
    |||| ||||| |||||| |||||||| |||||||| | ||||||||||||| ||| |||||||||| ||||||||||  |||||| |||||       |     
T  28898011 accaccttaggtggcatataccacttatacacccatacacaattgtgacatgtgtccatgtggtccccacacacacaagaaactc-ccttt-------ca 28898102  T
Q  242 cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcc 306  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  28898103 cacactctcatatgagagtggtacatagtgtgtatggagaaaatggtgttcatgaaacattatcc 28898167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 142 - 306
Target Start/End: Original strand, 11904869 - 11905035
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactct 241  Q
    |||| ||||| |||||| ||||||||||||||||||||| ||||||||||| ||| ||||||||||  || ||||||  ||||||| ||||     ||||    
T  11904869 accaccttaggtggcatataccacttgtacacccacatataattgtgacatgtgtccatgtggtccctactcacacaagaaactcatcttttgtgtctct 11904968  T
Q  242 c--acactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcc 306  Q
    |  |||||||||||||| |||| ||||  |||||||| |||||||  ||||||||||||||||||||    
T  11904969 caaacactctcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcc 11905035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 142 - 295
Target Start/End: Original strand, 2599547 - 2599692
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactct 241  Q
    |||| ||||| ||||||||||||||| |||||||| | ||||||||||||| |||||||||||||| |||| |||||  ||||||||        | ||     
T  2599547 accaccttaggtggcatgtaccacttatacacccatacacaattgtgacatgtgttcatgtggtccccacatacacaagaaactcac--------attca 2599638  T
Q  242 cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatg 295  Q
    |||||||||||||||||||| ||||||||||||||| | ||||  |||||||||    
T  2599639 cacactctcacatgggagtggtacatagtgtgtatgaaaaaaagggtgttcatg 2599692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 41075763 - 41075693
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcaca 212  Q
    |||| ||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  41075763 accaccttaggtgacatgtaccacttgtacacccacatacaattgtgacatgtgttcatgtggtccccaca 41075693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 31774740 - 31774810
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcaca 212  Q
    |||| ||||| || |||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||    
T  31774740 accaccttaggtgacatgtaccacttgtacactcacatacaattgtgacatgtgttcatgtggtccccaca 31774810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 245
Target Start/End: Complemental strand, 10391469 - 10391368
Alignment:
Q  144 catcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactctca 243  Q
    |||||||| |||||||| |||||| |||||||| | ||||||||||||| ||| |||||||||| |||||||| |  |||||||| || ||| |||||||    
T  10391469 catcttaggtggcatgtgccacttatacacccatacacaattgtgacatgtgtccatgtggtccccacacacataagaaactcactttcacacactctca 10391370  T
Q  244 ca 245  Q
    ||    
T  10391369 ca 10391368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 307
Target Start/End: Original strand, 35200572 - 35200739
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactct 241  Q
    |||| ||||| |||||| ||  ||||||||||||||||| ||||||||||| ||| |||| |||||  ||||| |||  ||||||| ||||     ||||    
T  35200572 accaccttaggtggcatatattacttgtacacccacatataattgtgacatgtgtccatgcggtccctacacatacaagaaactcatcttttgtgtctct 35200671  T
Q  242 ca--cactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcct 307  Q
    ||  ||||||||||||| |||| ||||  |||||||| |||||||  |||||||| ||||||||||||    
T  35200672 caaacactctcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatcaaacattatcct 35200739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 8368537 - 8368472
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcc 207  Q
    |||| ||||| |||||||||||||||||||||||||| ||||||||||||| ||| || |||||||    
T  8368537 accaccttaggtggcatgtaccacttgtacacccacacacaattgtgacatgtgtccacgtggtcc 8368472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 228
Target Start/End: Original strand, 27497194 - 27497274
Alignment:
Q  148 ttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcac 228  Q
    |||| |||||||||||||||||||| ||||| ||||||| ||||| ||||||||||||   || ||||||| |||||||||    
T  27497194 ttaggtggcatgtaccacttgtacatccacagacaattgcgacatgtgttcatgtggtttccatacacacaaaaaactcac 27497274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 16465778 - 16465728
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacat 192  Q
    |||| |||||| ||||||||||||||||| |||||||||||||||||||||    
T  16465778 accaccttagacggcatgtaccacttgtatacccacatacaattgtgacat 16465728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 10592010 - 10592082
Alignment:
Q  160 taccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcaccttt 232  Q
    ||||||||||||||||||||| ||||||||||| ||| |||||||||   |||||||||  ||||||| ||||    
T  10592010 taccacttgtacacccacatataattgtgacatgtgtccatgtggtctctacacacacaagaaactcatcttt 10592082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 45413704 - 45413628
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacaca 218  Q
    |||| ||||| ||||||||||||||| |||| ||| | ||||||||||||| ||| ||| |||||| ||||||||||    
T  45413704 accaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatatggtccccacacacaca 45413628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 45413613 - 45413554
Alignment:
Q  248 ctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcct 307  Q
    ||||||| |||||| | ||||||||||||||||||||  |||||||||||||||| ||||    
T  45413613 ctcacataggagtggtgcatagtgtgtatggagaaaagggtgttcatgaaacattgtcct 45413554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 14342250 - 14342185
Alignment:
Q  242 cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatccta 308  Q
    ||||||||||||||| |||| ||||  ||||||||||| |||| ||||| |||||||||||||||||    
T  14342250 cacactctcacatgg-agtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatccta 14342185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 12142097 - 12142148
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacata 193  Q
    |||| ||||| |||||| ||||||||||||| ||||||| ||||||||||||    
T  12142097 accaccttaggtggcatataccacttgtacatccacatataattgtgacata 12142148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 1993806 - 1993757
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgaca 191  Q
    |||| ||||| ||||||||| |||||||||||||||| |||||| |||||    
T  1993806 accaccttaggtggcatgtatcacttgtacacccacacacaattttgaca 1993757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 43066070 - 43066021
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgaca 191  Q
    |||| ||||| |||||||||||||||||||| ||||| |||||| |||||    
T  43066070 accaccttaggtggcatgtaccacttgtacatccacacacaattttgaca 43066021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 45502693 - 45502742
Alignment:
Q  157 atgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtc 206  Q
    ||||||||||||||||  || ||||||||||||||| ||| |||||||||    
T  45502693 atgtaccacttgtacattcatatacaattgtgacatgtgtccatgtggtc 45502742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 157 - 307
Target Start/End: Original strand, 50498241 - 50498383
Alignment:
Q  157 atgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactctcacactctcacatgg 256  Q
    ||||||||||| |||||||| | ||||||||||||| ||| |||||||||| ||||||||||  |||||||| || |||        |||||||| ||||    
T  50498241 atgtaccacttatacacccatacacaattgtgacatgtgtccatgtggtccccacacacacaagaaactcacattcaca--------cactctcatatgg 50498332  T
Q  257 gagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcct 307  Q
    ||||| || ||||| |||||||||||||| |||||||||||||||||||||    
T  50498333 gagtggtatatagtatgtatggagaaaatggtgttcatgaaacattatcct 50498383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 5817546 - 5817471
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacac 217  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||| ||| |||||||||| |||||||||    
T  5817546 accatcttaggtggcatgtaccacttgtacacccacacacaattgtgacatgtgtccatgtggtccccacacacac 5817471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 147 - 307
Target Start/End: Complemental strand, 22364622 - 22364470
Alignment:
Q  147 cttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactctcacac 246  Q
    ||||| |||||| |||||||| |||||||| |||||||||||| || ||| |||||||||| |  |||||||  |||||||| |||| |        |||    
T  22364622 cttaggtggcatataccacttatacacccatatacaattgtgatatgtgtccatgtggtcccctaacacacaagaaactcacttttata--------cac 22364531  T
Q  247 tctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcct 307  Q
    ||||||||||||||| |||||| | |||||||||||||  |||||||||||||||||||||    
T  22364530 tctcacatgggagtggtacataatatgtatggagaaaagggtgttcatgaaacattatcct 22364470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 51579336 - 51579427
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcaccttta 233  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||| | |||||| ||| ||||||||| ||||    
T  51579336 accaccttaggtggcatgtaccacttgtacacccacatacaattgtgacatgtgtccatgtggttcccacacatacaaaaaactcacattta 51579427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 142 - 302
Target Start/End: Original strand, 32290230 - 32290377
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactct 241  Q
    |||||||||| ||||||||||||||| |||||||| | ||||||||||||      |||||||||||||||||||||  ||| |||| ||  |||||       
T  32290230 accatcttaggtggcatgtaccacttatacacccatacacaattgtgacac-----catgtggtcctcacacacacaagaaattcacttt--catac--- 32290319  T
Q  242 cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacatt 302  Q
       ||||||||||||||||| |||||||| |||||||||||||  ||||||||||||||||    
T  32290320 ---actctcacatgggagtggtacatagtatgtatggagaaaagagtgttcatgaaacatt 32290377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 41277236 - 41277312
Alignment:
Q  147 cttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaa 223  Q
    ||||| || |||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||    
T  41277236 cttaggtgacatgtaccacctgtacacccacatacaattgtgacatgtgttcatgtggtccccacacacacaaaaaa 41277312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 306
Target Start/End: Complemental strand, 45996060 - 45995895
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtc-ctcacacacacataaaactcacctttacatactc 240  Q
    |||||||||| |||||||||||||||||||||||||| |||||| |||||  ||||| ||||||| | |||||||| | ||||||||| | ||    |||    
T  45996060 accatcttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgttcttgtggtctcccacacaca-aaaaaactcacatgtattgtctc 45995962  T
Q  241 t--cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcc 306  Q
    |  ||||||||||||| |||||| ||||  ||||||||||| |||| ||||| |||||||||||||||    
T  45995961 tcacacactctcacat-ggagtggtacaatgtgtgtatggaaaaaaatgtgtacatgaaacattatcc 45995895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 142 - 308
Target Start/End: Complemental strand, 42179303 - 42179147
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactct 241  Q
    |||| ||||| ||| ||||||||||| ||||||||   ||||||||||||| ||| |||||||||| |||||||||| |||||||          ||| |    
T  42179303 accaccttaggtggtatgtaccacttatacacccatgcacaattgtgacatgtgtccatgtggtccccacacacacaaaaaactc----------acttt 42179214  T
Q  242 cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatccta 308  Q
    || |||||||||| |||||| ||||||||||||||| | ||||   |||||||||||||||||||||    
T  42179213 cagactctcacataggagtggtacatagtgtgtatgaaaaaaaggatgttcatgaaacattatccta 42179147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 24059299 - 24059225
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacaca 216  Q
    |||| ||||||||||||||| || ||||||||||||||||||||||||||| ||| |||||||| | ||||||||    
T  24059299 accaccttagatggcatgtatcatttgtacacccacatacaattgtgacatgtgtccatgtggttcccacacaca 24059225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 144 - 307
Target Start/End: Complemental strand, 25784072 - 25783908
Alignment:
Q  144 catcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcaccttta--catactct 241  Q
    |||||||| |||||||||||||||||||| ||||| | ||||||||||| | ||||||| |||| |||| ||||| ||||||||| ||||    | | |     
T  25784072 catcttaggtggcatgtaccacttgtacatccacacataattgtgacatgtattcatgtagtccccacatacacaaaaaactcacttttattgtttcaca 25783973  T
Q  242 cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcct 307  Q
    ||||||||||||| ||| || ||||  |||||||| || ||||   ||||||||||||||||||||    
T  25783972 cacactctcacatagga-tggtacaacgtgtgtatagaaaaaaagatgttcatgaaacattatcct 25783908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 142 - 312
Target Start/End: Original strand, 55281224 - 55281396
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacac-ataaaactcacctttacatactc 240  Q
    |||| ||||| |||||||||||||||||||||||||| |||||| |||||  ||| | |||||||| | ||||||| | |||| |||| | ||    |||    
T  55281224 accaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtccccccacacacaaaaaaagtcacatgtattgtctc 55281323  T
Q  241 tcacac--tctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcctagata 312  Q
    ||||||  |||||||| |||||| ||||  || |||||||| |||| ||||| |||||||||||||||||||||    
T  55281324 tcacacattctcacat-ggagtggtacaatgtatgtatggaaaaaagtgtgtacatgaaacattatcctagata 55281396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 148 - 306
Target Start/End: Original strand, 48525348 - 48525508
Alignment:
Q  148 ttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactctc--aca 245  Q
    |||| |||||| ||||||||||||| ||||||| ||||||||||| |||||||||| |||  ||||||| |  ||||| | ||||     |||||  |||    
T  48525348 ttaggtggcatataccacttgtacatccacatataattgtgacatgtgttcatgtgttccctacacacataagaaacttatcttttgtgtctctcaaaca 48525447  T
Q  246 ctctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcc 306  Q
    ||||||||||| |||| ||||  |||||||| ||| |||  ||||||||||||||||||||    
T  48525448 ctctcacatggaagtggtacaatgtgtgtatagaggaaagggtgttcatgaaacattatcc 48525508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 51579596 - 51579657
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtg 203  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||||||||| ||| ||||||    
T  51579596 accaccttaggtggcatgtaccacttgtacacccaaatacaattgtgacatgtgtccatgtg 51579657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 306
Target Start/End: Complemental strand, 37605857 - 37605691
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacac-ataaaactcaccttta--catac 238  Q
    |||| ||||| |||||||||||||||||||||||||| |||||| |||||  ||| | |||||||| | ||||||| | |||| |||| | ||      |    
T  37605857 accaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtccccccacacacaaaaaaagtcacatgtattgtccc 37605758  T
Q  239 tctcacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcc 306  Q
    || ||||||||||||| |||||| ||||  ||||||||||| |||| ||||| |||||||||||||||    
T  37605757 tcacacactctcacat-ggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 37605691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 308
Target Start/End: Original strand, 17044019 - 17044186
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggt-cctcacacacacataaaactcacctttacatactc 240  Q
    |||| ||||| |||||||||||||||||||||||||| |||||| |||||  ||| | |||||| || |||||||| | |||| || | | ||    |||    
T  17044019 accaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggttccccacacacaaa-aaaagtcccatgtattgtctc 17044117  T
Q  241 tcacac--tctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatccta 308  Q
    ||||||  |||||||||| |||| ||||  ||||||||||| |||| ||||| |||||||||||||||||    
T  17044118 tcacacactctcacatgg-agtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatccta 17044186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 306
Target Start/End: Complemental strand, 25164637 - 25164471
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtgg-tcct-cacacacacataaaactcacctttacatact 239  Q
    |||| ||||| |||||||||||||||||||||||||| |||||| |||||  ||| | ||||| |||| |||||||| | ||||||||| | ||    ||    
T  25164637 accaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggttcctccacacaca-aaaaaactcacatgtattgtct 25164539  T
Q  240 ct--cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcc 306  Q
    ||  ||||||||||||| |||||| ||||  ||||||||| | |||| ||||| |||||||||||||||    
T  25164538 ctcacacactctcacat-ggagtggtacaatgtgtgtatgcaaaaaagtgtgtacatgaaacattatcc 25164471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 36851254 - 36851317
Alignment:
Q  153 tggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacaca 216  Q
    |||||||||||||||||||||||||  |  |||||||||| ||| ||||| |||||||||||||    
T  36851254 tggcatgtaccacttgtacacccacgcatgattgtgacatgtgtccatgtagtcctcacacaca 36851317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 307
Target Start/End: Complemental strand, 14786824 - 14786735
Alignment:
Q  220 aaaactcacctttacatactctcacac--tctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcct 307  Q
    ||||||||| || ||| ||||| ||||  ||||||||| ||||| |||||| |||||||| | ||||| |||| ||||||||||||||||    
T  14786824 aaaactcacattcacacactcttacacaatctcacatgagagtggtacataatgtgtatgaaaaaaatggtgtccatgaaacattatcct 14786735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 3287100 - 3287149
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgaca 191  Q
    |||| ||||||||| |||||||||||||||||||||| |||||| |||||    
T  3287100 accaccttagatggtatgtaccacttgtacacccacacacaattttgaca 3287149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 14150023 - 14149959
Alignment:
Q  243 acactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcct 307  Q
    ||||| |||||||| |||| ||||  |||||||| |||||||  |||||||||||||||||||||    
T  14150023 acactttcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcct 14149959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 20107126 - 20107190
Alignment:
Q  142 accatcttagatggcatgtaccacttgtaca-cccacatacaattgtgacatatgttcatgtggt 205  Q
    |||| ||||| |||||||||||||||||||| ||| || ||||||||||||| ||| ||||||||    
T  20107126 accaccttaggtggcatgtaccacttgtacaccccgcacacaattgtgacatgtgtccatgtggt 20107190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 43749108 - 43749157
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgaca 191  Q
    |||| ||||| |||||||||||||||||||||||||| | |||| |||||    
T  43749108 accaccttaggtggcatgtaccacttgtacacccacacataattttgaca 43749157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 26720067 - 26719991
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacaca 218  Q
    |||| ||||| |||| |||||||||| ||||||||||| ||||||| |||| |||   |||||||| ||||| ||||    
T  26720067 accaccttaggtggcgtgtaccacttctacacccacattcaattgtaacatgtgtctttgtggtccccacacgcaca 26719991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 42974544 - 42974458
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcac 228  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||||||| ||||||| |||||| |||||||||| |||||||||    
T  42974544 accaccttaggtggcatgtaccacttatacacccacatacaattgtgacatgtgttcatatggtccccacacacacaaaaaactcac 42974458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 142 - 307
Target Start/End: Original strand, 31741059 - 31741216
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactct 241  Q
    |||| ||||| ||||||||||||||| |||||||| | ||||||||||||| |||  ||||| ||| ||||||||||  |||||||| |        ||     
T  31741059 accaccttaggtggcatgtaccacttatacacccatacacaattgtgacatgtgtctatgtgctccccacacacacaagaaactcactt--------tca 31741150  T
Q  242 cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcct 307  Q
    |||||||||||||||||||| |||||||||||||| || ||||   ||||||||||||||||||||    
T  31741151 cacactctcacatgggagtggtacatagtgtgtatagaaaaaaggatgttcatgaaacattatcct 31741216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 142 - 307
Target Start/End: Complemental strand, 38349625 - 38349458
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactct 241  Q
    |||||||||| |||||| ||||||||||||||||||||| ||||||||||| ||| |||||| |||  ||||||| |  ||||||| ||||     ||||    
T  38349625 accatcttaggtggcatataccacttgtacacccacatataattgtgacatgtgtccatgtgttccctacacacataagaaactcatcttttgtgtctct 38349526  T
Q  242 c--acactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcct 307  Q
    |  |||||||||||||| |||| ||||  |||||||| ||| |||  |||||||||||||||||||||    
T  38349525 caaacactctcacatggaagtggtacaatgtgtgtatagaggaaagggtgttcatgaaacattatcct 38349458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 144 - 304
Target Start/End: Complemental strand, 37536479 - 37536317
Alignment:
Q  144 catcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactctc- 242  Q
    |||||||| |||||| || ||| |||||||||||||| ||||||||||| ||| |||| |||||  |||||||||  ||||||| ||||     |||||     
T  37536479 catcttaggtggcatatatcacatgtacacccacatataattgtgacatgtgtccatgcggtccctacacacacaagaaactcatcttttgtatctctca 37536380  T
Q  243 -acactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattat 304  Q
     |||||||||||||  |||| ||||  |||||||| |||||||| ||||||||||||||||||    
T  37536379 aacactctcacatgaaagtggtacaatgtgtgtatagagaaaatggtgttcatgaaacattat 37536317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 11752613 - 11752703
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcaccttt 232  Q
    |||| ||||| ||||||||| |||||||||||| ||||| ||||||||||| |||||| ||||||| |||||||| | |||||||||||||    
T  11752613 accaccttaggtggcatgtatcacttgtacacctacatataattgtgacatgtgttcacgtggtccccacacacataaaaaactcaccttt 11752703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 308
Target Start/End: Original strand, 28713693 - 28713861
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactct 241  Q
    |||| ||||| |||||| ||||||||||||||||||||| ||||||||||| ||| |||||| |||  ||||||| |  ||||||| ||||     ||||    
T  28713693 accaccttaggtggcatataccacttgtacacccacatataattgtgacatgtgtccatgtgttccctacacacataagaaactcatcttttgtgtctct 28713792  T
Q  242 c--acactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatccta 308  Q
    |  |||||||||||||  |||| ||||   ||||||| |||||||  ||||||||||||||||||||||    
T  28713793 caaacactctcacatgaaagtggtacaatatgtgtatagagaaaagggtgttcatgaaacattatccta 28713861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 43359090 - 43359155
Alignment:
Q  242 cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcct 307  Q
    |||||||||||||| | ||||||||| ||||||||||||||||| ||||  |||||||||||||||    
T  43359090 cacactctcacatgagggtgatacattgtgtgtatggagaaaatggtgtcaatgaaacattatcct 43359155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 307
Target Start/End: Complemental strand, 46576408 - 46576241
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaac-tcacctttacatactc 240  Q
    |||| ||||| |||||||||||||||||||||||||| |||||| | |||  ||| | |||||| | | |||||||| ||||  |||| | ||    |||    
T  46576408 accaccttaggtggcatgtaccacttgtacacccacacacaattttaacaagtgtccttgtggttcccccacacacaaaaaaagtcacatgtattgtctc 46576309  T
Q  241 tcacac--tctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcct 307  Q
    ||||||  |||||||||| |||| ||||  ||||||||||| |||| ||||| ||||||||||||||||    
T  46576308 tcacacactctcacatgg-agtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 46576241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 142 - 279
Target Start/End: Complemental strand, 47480178 - 47480041
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcacctttacatactct 241  Q
    |||| ||||| |||||||||||| ||||||||||| ||||||||||||||| ||| ||| |||| | |||||||| | |||||| || ||||    ||||    
T  47480178 accaccttaggtggcatgtaccatttgtacaccca-atacaattgtgacatgtgtccatatggttcccacacaca-aaaaaacttacatttattgtctct 47480081  T
Q  242 --cacactctcacatgggagtgatacatagtgtgtatgga 279  Q
      |||||||||||||||| ||| ||||  |||||||||||    
T  47480080 tacacactctcacatgggggtggtacaatgtgtgtatgga 47480041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 305
Target Start/End: Original strand, 36675939 - 36676003
Alignment:
Q  241 tcacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatc 305  Q
    |||||||||||||||| ||||||||||||| | |||||||||||  ||||| || ||| ||||||    
T  36675939 tcacactctcacatggaagtgatacatagtatatatggagaaaagggtgttgatcaaatattatc 36676003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 38755061 - 38754971
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgacatatgttcatgtggtcctcacacacacataaaactcaccttta 233  Q
    |||| ||||| |||||||||||||||| ||||||| | | |||| |||||| ||| |||||| ||| |||||||| | ||||||||| ||||    
T  38755061 accaccttaggtggcatgtaccacttgaacacccatacataattatgacatgtgtccatgtgatccccacacaca-aaaaaactcacattta 38754971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 6220227 - 6220185
Alignment:
Q  242 cacactctcacatgggagtgatacatagtgtgtatggagaaaa 284  Q
    |||||||||||||| ||||| ||||||||||||||||| ||||    
T  6220227 cacactctcacatgagagtggtacatagtgtgtatggaaaaaa 6220185  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 33496618 - 33496683
Alignment:
Q  242 cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatccta 308  Q
    ||||||||||||||| |||| || |  ||||||||||| |||| ||||| |||||||||||||||||    
T  33496618 cacactctcacatgg-agtggtataatgtgtgtatggaaaaaagtgtgtacatgaaacattatccta 33496683  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 30922773 - 30922709
Alignment:
Q  242 cacactctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcct 307  Q
    ||||||||||||||| |||| ||||  ||||||||||| |||| | ||| ||||||||||||||||    
T  30922773 cacactctcacatgg-agtggtacaatgtgtgtatggaaaaaagtatgtacatgaaacattatcct 30922709  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 33496515 - 33496564
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgaca 191  Q
    |||| ||||| || ||||||||||||||||||||||||| |||| |||||    
T  33496515 accaccttaggtgacatgtaccacttgtacacccacatataattttgaca 33496564  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 48460675 - 48460724
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgaca 191  Q
    |||| ||||| |||||||||||| ||||||| |||||||||||| |||||    
T  48460675 accaccttaggtggcatgtaccatttgtacatccacatacaattttgaca 48460724  T

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Target: scaffold0933 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 3219 - 3170
Alignment:
Q  142 accatcttagatggcatgtaccacttgtacacccacatacaattgtgaca 191  Q
    ||||||||||||| ||||||||| |||||||||||||||||||| |||||    
T  3219 accatcttagatgacatgtaccatttgtacacccacatacaattttgaca 3170  T

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Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 307
Target Start/End: Original strand, 52906 - 52995
Alignment:
Q  220 aaaactcacctttacatactctcacac--tctcacatgggagtgatacatagtgtgtatggagaaaattgtgttcatgaaacattatcct 307  Q
    ||||||||| || ||| ||||| ||||  ||||||||| ||||| |||||| |||||||| | ||||| |||| ||||||||||||||||    
T  52906 aaaactcacattcacacactcttacacaatctcacatgagagtggtacataatgtgtatgaaaaaaatggtgtccatgaaacattatcct 52995  T

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