View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15025_high_3 (Length: 709)

Name: NF15025_high_3
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15025_high_3
NF15025_high_3
[»] chr6 (5 HSPs)
chr6 (246-693)||(1852430-1852876)
chr6 (1-182)||(1852940-1853121)
chr6 (535-612)||(8010259-8010338)
chr6 (557-613)||(24774682-24774741)
chr6 (557-612)||(13360659-13360717)
[»] chr5 (1 HSPs)
chr5 (557-614)||(35095869-35095929)
[»] chr3 (2 HSPs)
chr3 (580-615)||(45535367-45535402)
chr3 (557-614)||(50016044-50016104)
[»] chr2 (4 HSPs)
chr2 (580-615)||(19629249-19629284)
chr2 (580-615)||(19826150-19826185)
chr2 (557-613)||(37053518-37053577)
chr2 (556-614)||(38355142-38355202)
[»] scaffold0654 (1 HSPs)
scaffold0654 (557-614)||(6723-6783)
[»] scaffold0014 (1 HSPs)
scaffold0014 (557-614)||(116642-116702)
[»] chr8 (1 HSPs)
chr8 (557-614)||(14482126-14482186)
[»] chr4 (2 HSPs)
chr4 (530-576)||(24160622-24160668)
chr4 (573-614)||(4071825-4071866)
[»] scaffold0590 (1 HSPs)
scaffold0590 (552-613)||(1161-1225)
[»] scaffold0275 (1 HSPs)
scaffold0275 (552-613)||(2750-2814)


Alignment Details
Target: chr6 (Bit Score: 416; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 246 - 693
Target Start/End: Complemental strand, 1852876 - 1852430
Alignment:
Q  246 tcatacctaaggggaaactattgtcatactcatattcatcattagtagtagtagtactagtaatgcaatcatcttgattgagttgtatctctctaattgc 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1852876 tcatacctaaggggaaactattgtcatactcatattcatcattagtagtagtagtactagtaatgcaatcatcttgattgagttgtatctctctaattgc 1852777  T
Q  346 ttgatttcctctatcaaccaccaaaagagagcaactacttctagcataaattaattcaaagtcatttgagaactttgcatcctcacttggaccatcaaca 445  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||    
T  1852776 ttgatttcctctatcatccaccaaaagagagcaactacttctagcataaattaaatcaaaatcatttgaaaactttgcatcctcacttggaccatcaaca 1852677  T
Q  446 tggcctcctagttggcctctttttcctccacctgcaatggttgttacccctattcaaaaagcatgtcatagagtttagggttacgttccgataaacaatt 545  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1852676 tggcctcctaattggcctctttttcctccacctgcaatggttgttacccctatacaaaaagcatgtcatagagtttagggttacgttccgataaacaatt 1852577  T
Q  546 taattgaacgtttatcatataagtgcttatataactatttctataacgaaaaataaattaaagtcaaatatgctttccatgtactaccttcatcactgat 645  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1852576 taattgaacgtttatcatataagtgcttatataactatttctataacgaaaaataaattaaagtcaaatatgctttccatgta-taccttcatcactgat 1852478  T
Q  646 ctttctgatggccatattcaatgtgtctgcaatgtaaatattgccact 693  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1852477 ctttctgatggccatattcaatgtgtctgcaatgtaaatattgccact 1852430  T

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Target: chr6; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 1853121 - 1852940
Alignment:
Q  1 aaaatccgtcaccctgaggggtcattgtatagaagataataacttacatctgaagatgaaaacatatctgtcaccctcctcttaagtaatgctaacatat 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1853121 aaaatctgtcaccctgaggggtcattgtatagaagataataacttacatctgaagatgaaaacatatccgtcaccctcctcttaagtaatgctaacatat 1853022  T
Q  101 aaccaaaaaatccagcagcaacaagagcagctattcctgtaatgttattatttgcacacaaattttagattagcatgctcct 182  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1853021 aaccaaaaaatccagcagaaacaagagcagctattcctgtaatgttattatttgcacacaaattttagattagcatgctcct 1852940  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 535 - 612
Target Start/End: Original strand, 8010259 - 8010338
Alignment:
Q  535 gataaacaatttaattgaacgtttatcatataagtgctta--tataa-ctatttctataacgaaaaataaattaaagtcaa 612  Q
    ||||||||| |||||| |  ||||||||||||||||||||  ||||| ||||||||||||| || |||||| |||||||||    
T  8010259 gataaacaacttaattaagtgtttatcatataagtgcttaggtataagctatttctataac-aacaataaaataaagtcaa 8010338  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 613
Target Start/End: Original strand, 24774682 - 24774741
Alignment:
Q  557 ttatcatataagtgcttatata---actatttctataacgaaaaataaattaaagtcaaa 613  Q
    ||||||| ||||||||||||||   |||||||||||||| ||| ||||| ||||||||||    
T  24774682 ttatcatgtaagtgcttatatataaactatttctataacaaaatataaaataaagtcaaa 24774741  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 557 - 612
Target Start/End: Original strand, 13360659 - 13360717
Alignment:
Q  557 ttatcatataagtgcttatat---aactatttctataacgaaaaataaattaaagtcaa 612  Q
    ||||||||||||||||||| |   ||||||||||||||| ||| ||||| |||||||||    
T  13360659 ttatcatataagtgcttatgtgcaaactatttctataacaaaatataaaataaagtcaa 13360717  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 557 - 614
Target Start/End: Complemental strand, 35095929 - 35095869
Alignment:
Q  557 ttatcatataagtgcttatat---aactatttctataacgaaaaataaattaaagtcaaat 614  Q
    |||||||||||||||||||||   ||||||||||||||| ||| ||||| |||||||||||    
T  35095929 ttatcatataagtgcttatatttaaactatttctataacaaaagataaaataaagtcaaat 35095869  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 580 - 615
Target Start/End: Complemental strand, 45535402 - 45535367
Alignment:
Q  580 ctatttctataacgaaaaataaattaaagtcaaata 615  Q
    ||||||||||||| ||||||||||||||||||||||    
T  45535402 ctatttctataacaaaaaataaattaaagtcaaata 45535367  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 557 - 614
Target Start/End: Complemental strand, 50016104 - 50016044
Alignment:
Q  557 ttatcatataagtgcttatata---actatttctataacgaaaaataaattaaagtcaaat 614  Q
    ||||||||||||||||||| ||   |||||||||||||| ||| ||||| |||||||||||    
T  50016104 ttatcatataagtgcttatgtatggactatttctataaccaaatataaaataaagtcaaat 50016044  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 580 - 615
Target Start/End: Original strand, 19629249 - 19629284
Alignment:
Q  580 ctatttctataacgaaaaataaattaaagtcaaata 615  Q
    ||||||||||||| ||||||||||||||||||||||    
T  19629249 ctatttctataacaaaaaataaattaaagtcaaata 19629284  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 580 - 615
Target Start/End: Original strand, 19826150 - 19826185
Alignment:
Q  580 ctatttctataacgaaaaataaattaaagtcaaata 615  Q
    ||||||||||||| ||||||||||||||||||||||    
T  19826150 ctatttctataacaaaaaataaattaaagtcaaata 19826185  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 613
Target Start/End: Original strand, 37053518 - 37053577
Alignment:
Q  557 ttatcatataagtgcttatata---actatttctataacgaaaaataaattaaagtcaaa 613  Q
    ||||||||||||||||||| ||   ||||||||||||||  |||||||| ||||||||||    
T  37053518 ttatcatataagtgcttatgtatagactatttctataacagaaaataaaataaagtcaaa 37053577  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 556 - 614
Target Start/End: Original strand, 38355142 - 38355202
Alignment:
Q  556 tttatcatataagtgcttat-ataa-ctatttctataacgaaaaataaattaaagtcaaat 614  Q
    |||||||||||||| ||||| |||| |||||||||||||| |||||||| || ||||||||    
T  38355142 tttatcatataagtacttattataagctatttctataacgtaaaataaaatagagtcaaat 38355202  T

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Target: scaffold0654 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 557 - 614
Target Start/End: Complemental strand, 6783 - 6723
Alignment:
Q  557 ttatcatataagtgcttatata---actatttctataacgaaaaataaattaaagtcaaat 614  Q
    ||||||||||||||||||| ||   |||||||||||||| ||||||||| | |||||||||    
T  6783 ttatcatataagtgcttatgtataaactatttctataacaaaaaataaacttaagtcaaat 6723  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 557 - 614
Target Start/End: Complemental strand, 116702 - 116642
Alignment:
Q  557 ttatcatataagtgcttatata---actatttctataacgaaaaataaattaaagtcaaat 614  Q
    ||||||||||||||||||| ||   |||||||||||||| ||||||||| | |||||||||    
T  116702 ttatcatataagtgcttatgtataaactatttctataacaaaaaataaacttaagtcaaat 116642  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 557 - 614
Target Start/End: Original strand, 14482126 - 14482186
Alignment:
Q  557 ttatcatataagtgcttatata---actatttctataacgaaaaataaattaaagtcaaat 614  Q
    ||||||||||||||||||| ||   |||||||||||||| ||| ||||| |||||||||||    
T  14482126 ttatcatataagtgcttatgtataaactatttctataacaaaagataaaataaagtcaaat 14482186  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 530 - 576
Target Start/End: Complemental strand, 24160668 - 24160622
Alignment:
Q  530 gttccgataaacaatttaattgaacgtttatcatataagtgcttata 576  Q
    ||||| |||||||| |||||| |||| ||||||||||||||||||||    
T  24160668 gttccaataaacaacttaattaaacgcttatcatataagtgcttata 24160622  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 573 - 614
Target Start/End: Original strand, 4071825 - 4071866
Alignment:
Q  573 tatataactatttctataacgaaaaataaattaaagtcaaat 614  Q
    |||||||||||||||||||| ||| ||||| |||||||||||    
T  4071825 tatataactatttctataacaaaagataaaataaagtcaaat 4071866  T

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Target: scaffold0590 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 552 - 613
Target Start/End: Complemental strand, 1225 - 1161
Alignment:
Q  552 aacgtttatcatataagtgcttat--ataa-ctatttctataacgaaaaataaattaaagtcaaa 613  Q
    ||||| ||||||||||||||||||  |||| ||||||||||||| ||| ||||| ||||||||||    
T  1225 aacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaa 1161  T

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Target: scaffold0275 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 552 - 613
Target Start/End: Original strand, 2750 - 2814
Alignment:
Q  552 aacgtttatcatataagtgcttat--ataa-ctatttctataacgaaaaataaattaaagtcaaa 613  Q
    ||||| ||||||||||||||||||  |||| ||||||||||||| ||| ||||| ||||||||||    
T  2750 aacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaa 2814  T

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