View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15025_high_46 (Length: 284)
Name: NF15025_high_46
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15025_high_46 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 38462218 - 38462485
Alignment:
| Q |
17 |
actagctactaaaaactatctactgatacgaaaaacaaagcaaaccctgctcctaagacaaggttcatattacattaaaaatcagaaatgaacacaacag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38462218 |
actagctactaaaaactatctactgatacgaaaaacaaagcaaaccctgctcctaagacaaggttcagattacattaaaaatcagaaatgaacacaacag |
38462317 |
T |
|
| Q |
117 |
accaacaagctagcaaacacagaatctgctgaaactacaaaccaggacagcagatatcaaaagtaaaggccagacttctactgagactgacatccagcag |
216 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38462318 |
accaaaaagctagcaaacacagaatctgctgaaactacaaaccaggacagcagatatcaaaagtaaaggccagacttctactgagactgacatccagcag |
38462417 |
T |
|
| Q |
217 |
ctgctaaaagaattagaccagatcatacaatgccacatcagaacaaaatcttcgttttggtaaatctt |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38462418 |
ctgctaaaagaattagaccagatcatacaatgccacatcagaacaaaatcttcgttttggtaaatctt |
38462485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University