View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15025_high_50 (Length: 267)
Name: NF15025_high_50
Description: NF15025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15025_high_50 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 15 - 267
Target Start/End: Original strand, 33039613 - 33039865
Alignment:
| Q |
15 |
actctcaactgagatagtattagaaattttaaattctgtgacatggttggtttttaatcaattaaatatattcttgccttataattatttacaataaaca |
114 |
Q |
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| T |
33039613 |
actctcaactgagatagtattagaaattttaaattctgtgacatggttggtttttaatcaattaaatatattcttgctttataattatttccaataaaca |
33039712 |
T |
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| Q |
115 |
ttttggttagtgttgtttagttagagtccattaaagatactctcagttttgataagtattcatgatgataatgtctttttctattttctaattagtgtct |
214 |
Q |
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| T |
33039713 |
ttttagttagtgttgtttagttagagtccactaaagatactctcagttttgataagtattcatgatgataatgtctttttctattttctaattagtgtct |
33039812 |
T |
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| Q |
215 |
aacacgtgttcatgattccaatttattggagagcttcccctttttaagcaatt |
267 |
Q |
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| T |
33039813 |
aacacgtgttcatgattccaatttattggagagcttcccctttttaagtaatt |
33039865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 260
Target Start/End: Original strand, 39953395 - 39953651
Alignment:
| Q |
15 |
actctcaactgagatagtattagaaattttaaattctgtgacatggttggttttta--atcaattaaatatattct----------tgccttataattat |
102 |
Q |
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| T |
39953395 |
actctcaactgagatagtattagaaattttaaattctgtgactaaattggtttttataatcaattaaatatattctcatgcttccttgctttataattat |
39953494 |
T |
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| Q |
103 |
ttacaataaacattttggttagtgttgtttagttagagtccattaaagatactctcagttttgataagtattcatgatgataatgtctttttctattttc |
202 |
Q |
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| T |
39953495 |
ttaccataaacattttagttagtgttgtttagttagagtccac-agagatactcttagttttgatgagtattcatgattataatgtctttttctatgttc |
39953593 |
T |
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| Q |
203 |
taattagtgtctaacacgtgttcatgattccaatttattggagagcttccccttttta |
260 |
Q |
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| T |
39953594 |
taattagtgtctaacacgtgttcattattccaatttattggagagcttccccttttta |
39953651 |
T |
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